BS24257.complete Sequence
3005 bp assembled on 2011-02-18
GenBank Submission: KX805928
> BS24257.complete
GAAGTTATCAGTCGACATGAAGTCTTCGAAGGGAGGCATCACCAAGAAGT
GCAAGACTATGGATTACACCAACTACGCCTATAATGAGGCAGTGGGTCGC
CTCAAGGTAATGCTGGCCGACAACTCGTACGTGGCACCCAAACTGGGAGG
AGGAGTGTCTTCCTATTTGCGCAACCTTAACGAGGATTCCGGGGACAACT
TCTCTGACAACCTATCGGTAATTGAGCGACCCGTCTTCTCGGACATTTCC
AAGTACTTGTCGCCCAGCCAGAAGTCGCGGATCAGCTCCTATCGCCCCAA
GAAGAGCTATGCCTCGGGATATCTCTCGGCTTCCAAGGAGAATCTAGCTT
CCACTCCTTCGCTTTACCCGAGCGCCTCAGTTCCGTCTGCTCCTCTTCCC
TCGGACAGTGTCCCGGCTCCTGTGGAGATTTTCAGCTTTATCGAAAAGCA
AGAGGACTACATCGAACAGCTGGAAAAGGAATCCAAGTACTGTCGCAACG
AGCTGACCAATCTGTTGGGTAAAGTCAAGGATGTGATCAATGAAAATGAG
CAGTTGACTGAGAACGCTCGCTCTGAGTTGGTGGGTCTCGGTTCGGGAAA
TTCGAAGCATCCAATTGTCACTACTAGTCCTTCCTCGGACAGTGACGAGC
ACTTGATGTTCGCCAGTGGACGTAAGACCCCGTCGACCCCAAGGAAAGGT
GCCTCCAAGGGACAGGTGCAAAGTCCTCGTTATGCAAGTGCACCCAATAT
CGTTTACGAGGCCAGAATCAGCGAGCTGGAAGCCGAACTAATGCAGGCCA
GCATCGATCTGAGGCGTCTGCGTACCGAGAACGAGGAGCTAAAGCGGAAA
CTGAGTCATACGGATCCCCTAACCACTGTGGCCACCTTGTCCGGGGGGTC
CAACTGTGAATTGCATCGCAAGCAGCTGGAGAGCCTGCAGCAGGATAAGC
AAACTCTGGAGGAAAGTGTTCGACACTTGCAGAGGCTTCTGGACGAGGCA
AAGGCTCAGGGCCAGGGTAGCGCCTCGTCCAAGCGATATATCAACGACTT
GATGCAGATGGAGCGCTCCCAGGCCGAGCTGGAGGTACGCCACCTCCGGG
ATGAACTGGATCGCCAGCACGAGCGGGTCAGGGAGCTGCAGCACGAGATG
GCTAGGCGGTTGGCCGAGGAGCGGGCCAGTGCCGAAAGGCGCTACAACAG
CCAGGTGGATCAACTGGGCGGAGATCTGAGTTGCCAATGGGAGCAGGTGT
CCAAGCTCCAGTTGGATCTGGAGCGTCAAAAACGCTACGAAACAGATCTC
AAGCGGGATGTGGCCAGTCGCAATTCGCAGATCGAAGAGCTGAAAATGGA
ACTAAGAGCCAATAGGACCACCTTCCTGGCGGACATGGCGCAGGTGAATG
CAGAGAAGCAATCTCTGGAGCAGGACATCACCTCGCTGCGCCTTCAGTTG
GATCGGGCTGCCAGGGAGGCCAAAACGGAGGCAGCTCGTCTTAATGCAGA
AATAAATTCGCTGAGGCAGCGCCTTGATCGCGGGGATGCTGATCTCCTGC
ACTCCAAACGAGAAGTACTGCGGCTCAATGATGAGATAGCCAATCTTGAA
AAGGAGCTTGCTTATGGGGAGTTAAAGAACGAGATACGACCTACCAAAAA
GGATCTGGACAAAAGGATCTCTGAATTGCAGGATAAGCATGCGGGAACGG
TAAATGAGCTTGAGGAAATGATAACATCTCAGAAGCAACTCATGGATAAA
CTGACCAACGAGTGTAAAACCTTAACGGGCAAATTAGAGGACACGACCTA
CAAGCACAAAGAGGAAATATCTGCTTTACAATCGAATCTAGAGTATCTGT
CCAATCGAATGTTGAGTAATGAGGAGCATATGAGTAAATTAGATAGCTCA
CCACACGATTATACTAGCTTAGTACCCGGAAAAGCCGCTTACGACTACCA
GGCAGCGACATATGGCACCCCAATCGAACCCATACAAAGCACCCCACAAC
CACACAACAGCGCCAGCGACAGTGATTACACGTCCGGAGGGATTGGCTTG
GGCGATGGAGCAACTGCATCCGCAACGGCAGCGGCAGCCACAGCAGCCAG
CATTGCTGCAGGAGCAGCTGCAGCAGCAGGATCAGCAGGATCAGGATCGA
CAGCCCCTGGACGAAAGAGCAGCATCGCCGACTATGGACTCCAGGATAAC
GATGACGAGAATCTCAAGGACAACCTTGGCCTGGGCGAGAAGCAGCAGCA
ACAACAGCAACAGCAGGACGTGGACAGGCAAAGGGAGCGAGAGGAACGCG
ACCGGGAGCTCCAGCAACTCCGCGAGCAGCGCGAAAAACGGGAAAGGGAA
CGCGAGCGGGAGCGGGAACGGGAGCAGGCCGAGCAGCAGCAACAGGCGGA
GCAGCAGCAGCTACAGTCGCAACCTGTGGCAGAGAGCAGCATTACCAATG
CCGGCAGCGCCAATCTGGCCGCCTATAACACCGACTACAGTGCCTACGAT
CAGCAGCAGTACGACGCCAGTGCCTATGATCCCAATGCCTATGGCCAGCA
GCAGTACGAGGGGCAGCAGTATGACTACGGCGATGCGGGAGCCGGATACG
ACTATGGAGCAGCTGACTATGGACAGTCTGGATACCAGTATGACGCCACG
CCAGGAGGCACCGCAGCCGGCCAGTCACAGCCGCAGTCCCAGTACCAGGT
ACCAGCTGCCCCCCAGCGAATGGCCACGGACTACAACAGATCGCCACCGC
CATTGGCAGCGGCGGCAACGGGCATCACGTCCCCGCCAGCAACAGGAGCG
ACCGGAGCAGCAGCAACACCTGCAGTTTCAACAGCAGGAGCAGCCGGAAC
AGGAGTATCCGGAACGGGCCGACCACAATCGCGCCCGGGCAGTGGAGCTG
TGGGGTCAGCAGCTGCGGCTGGAGCAGTCGCCGGCGGAAAATCCGCTGTG
CCACAACAGCCTGCCGCGTCAGCCGCCGGCAAAAAGTAGAAGCTTTCTAG
ACCAT
BS24257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45105-RD | 2973 | CG45105-PD | 1..2973 | 17..2989 | 14850 | 100 | Plus |
| CG45105-RC | 3417 | CG45105-PC | 259..2940 | 17..2698 | 13395 | 100 | Plus |
| CG45105-RB | 3159 | CG45105-PB | 1..2682 | 17..2698 | 13395 | 100 | Plus |
| CG45105-RC | 3417 | CG45105-PC | 2937..3140 | 2786..2989 | 1020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45105-RD | 3481 | CG45105-RD | 117..3089 | 17..2989 | 14850 | 100 | Plus |
| CG45105-RC | 3735 | CG45105-RC | 462..3143 | 17..2698 | 13395 | 100 | Plus |
| CG45105-RB | 3390 | CG45105-RB | 117..2798 | 17..2698 | 13395 | 100 | Plus |
| CG45105-RC | 3735 | CG45105-RC | 3140..3343 | 2786..2989 | 1020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15914957..15916351 | 1606..212 | 6960 | 99.9 | Minus |
| 3R | 32079331 | 3R | 15910764..15911820 | 2989..1933 | 5270 | 99.9 | Minus |
| 3R | 32079331 | 3R | 15916404..15916606 | 219..17 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 15912046..15912170 | 1934..1810 | 625 | 100 | Minus |
| 3R | 32079331 | 3R | 15914386..15914504 | 1809..1691 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 15914796..15914882 | 1691..1605 | 435 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2976 | 2241..2882 | 330 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2871 | 2237..2835 | 303 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6958 | 2241..2474 | 282 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2655 | 2051..2423 | 264 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2854 | 2301..2851 | 244 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6952 | 2039..2329 | 230 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7086 | 2079..2447 | 226 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2927 | 2061..2520 | 225 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6989 | 2700..2960 | 222 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..3024 | 2059..2460 | 215 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6918 | 2241..2415 | 211 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6857 | 2731..2865 | 203 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6900 | 2678..2857 | 202 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6918 | 2238..2394 | 198 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2384 | 2789..2867 | 188 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..7079 | 2091..2507 | 180 | 54 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6825 | 2744..2854 | 171 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6899 | 2787..2960 | 169 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6869 | 2730..2859 | 164 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6956 | 2238..2420 | 164 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2512 | 2656..2854 | 157 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2469 | 2734..2865 | 156 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2534 | 2646..2837 | 156 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6952 | 2652..2852 | 155 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2392 | 2764..2854 | 150 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..3004 | 2241..2857 | 150 | 53.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6911 | 2791..2993 | 150 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 989..1155 | 2164..2331 | 145 | 56.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1030 | 2786..2844 | 144 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1154 | 2743..2850 | 138 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2674 | 2756..2845 | 136 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6948 | 2241..2394 | 134 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2753..3004 | 2154..2400 | 132 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1558..1585 | 2241..2268 | 131 | 96.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1588 | 2786..2860 | 125 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1163 | 2788..2844 | 125 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7348..7384 | 1986..2022 | 122 | 81.1 | Plus |
BS24257.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 10:40:39 Download gff for
BS24257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31291-RC | 117..3089 | 17..2989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:31 Download gff for
BS24257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31291-RC | 117..3089 | 17..2989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:48 Download gff for
BS24257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45105-RD | 117..3089 | 17..2989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:48 Download gff for
BS24257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15910764..15911818 | 1935..2989 | 99 | <- | Minus |
| 3R | 15912046..15912170 | 1810..1934 | 100 | <- | Minus |
| 3R | 15914386..15914503 | 1692..1809 | 100 | <- | Minus |
| 3R | 15914796..15914880 | 1607..1691 | 100 | <- | Minus |
| 3R | 15914957..15916345 | 218..1606 | 100 | <- | Minus |
| 3R | 15916406..15916606 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:31 Download gff for
BS24257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11736486..11737540 | 1935..2989 | 99 | <- | Minus |
| arm_3R | 11737768..11737892 | 1810..1934 | 100 | <- | Minus |
| arm_3R | 11740108..11740225 | 1692..1809 | 100 | <- | Minus |
| arm_3R | 11740518..11740602 | 1607..1691 | 100 | <- | Minus |
| arm_3R | 11740679..11742067 | 218..1606 | 100 | <- | Minus |
| arm_3R | 11742128..11742328 | 17..217 | 100 | | Minus |
BS24257.pep Sequence
Translation from 16 to 2988
> BS24257.pep
MKSSKGGITKKCKTMDYTNYAYNEAVGRLKVMLADNSYVAPKLGGGVSSY
LRNLNEDSGDNFSDNLSVIERPVFSDISKYLSPSQKSRISSYRPKKSYAS
GYLSASKENLASTPSLYPSASVPSAPLPSDSVPAPVEIFSFIEKQEDYIE
QLEKESKYCRNELTNLLGKVKDVINENEQLTENARSELVGLGSGNSKHPI
VTTSPSSDSDEHLMFASGRKTPSTPRKGASKGQVQSPRYASAPNIVYEAR
ISELEAELMQASIDLRRLRTENEELKRKLSHTDPLTTVATLSGGSNCELH
RKQLESLQQDKQTLEESVRHLQRLLDEAKAQGQGSASSKRYINDLMQMER
SQAELEVRHLRDELDRQHERVRELQHEMARRLAEERASAERRYNSQVDQL
GGDLSCQWEQVSKLQLDLERQKRYETDLKRDVASRNSQIEELKMELRANR
TTFLADMAQVNAEKQSLEQDITSLRLQLDRAAREAKTEAARLNAEINSLR
QRLDRGDADLLHSKREVLRLNDEIANLEKELAYGELKNEIRPTKKDLDKR
ISELQDKHAGTVNELEEMITSQKQLMDKLTNECKTLTGKLEDTTYKHKEE
ISALQSNLEYLSNRMLSNEEHMSKLDSSPHDYTSLVPGKAAYDYQAATYG
TPIEPIQSTPQPHNSASDSDYTSGGIGLGDGATASATAAAATAASIAAGA
AAAAGSAGSGSTAPGRKSSIADYGLQDNDDENLKDNLGLGEKQQQQQQQQ
DVDRQREREERDRELQQLREQREKREREREREREREQAEQQQQAEQQQLQ
SQPVAESSITNAGSANLAAYNTDYSAYDQQQYDASAYDPNAYGQQQYEGQ
QYDYGDAGAGYDYGAADYGQSGYQYDATPGGTAAGQSQPQSQYQVPAAPQ
RMATDYNRSPPPLAAAATGITSPPATGATGAAATPAVSTAGAAGTGVSGT
GRPQSRPGSGAVGSAAAAGAVAGGKSAVPQQPAASAAGKK*
BS24257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45105-PD | 990 | CG45105-PD | 1..990 | 1..990 | 4997 | 100 | Plus |
| CG45105-PC | 1138 | CG45105-PC | 87..987 | 1..901 | 4524 | 99.3 | Plus |
| CG45105-PB | 1052 | CG45105-PB | 1..901 | 1..901 | 4524 | 99.3 | Plus |
| CG45105-PF | 1093 | CG45105-PF | 1..815 | 1..842 | 3026 | 75.2 | Plus |
| CG45105-PH | 721 | CG45105-PH | 87..693 | 1..607 | 3007 | 98.7 | Plus |
