BS24301.complete Sequence
2456 bp assembled on 2011-03-18
GenBank Submission: KX803307
> BS24301.complete
GAAGTTATCAGTCGACATGCTGAGCATTATAAATGCAATGATTGCCTTCC
TCCTGGCAACGACACTTTGCAGTGGATACGGATACGCGCAGGCCCAGTTG
CTCGACGAGGACGACGACCTGGCCTTCGGAAGGCCCTGGCCCACCTACAG
CCTACAGAACATGCCCAAGACGCAGTTCACCTGCCACGACAAGATCCTGG
GTGGCTACTATGCCGATCCGGAGACCCAGTGCCAGATGTTCCACGTCTGC
GTCAAGCTGCCCGGAGTGGGGGTGCAGGACTATCGATTCCTCTGTCCCAA
CACAACGGCCTTCGACCAGGAGCTGCAAATCTGCGCCAATTGGTTGGATG
TGGACTGCGACAAGGCAACCTCCTTCTACGACAATGGCCACCTCAACGAT
CTATATCGCAACGGAGACGAGAGCAAATCTGCCAACGAAGAGGAGGCAAC
CTTCCACCTTCAACGCGCCGAAACGGGCGATATACGTCGCTCTAAGGAGA
ACCACAATAATAACAATATTAACAACAATCGTGGAGCGGACCAAAAACCA
CGCCATCGCCACAATTATGCCCAGACAGGTGGCAGCTCTAGTTCCAGCTC
CAGTCCCAAATTGGAGATCACGCAATCCACCAAGCGACCCATTTCCACCT
ATTACACGCCGACCACTTTGGGCAGCACCACCACATCCACTACATCGACC
ACAACCACGACGGAACGCAGCTATTACAACAATAATTACAACAACAATTA
CAGCAACAATGACGACTCGAAGCAAGATTTAGACGATATCTTCAAGGGTT
CACACAGCTCGCACTTCTTCTCCAACCGCCACGGGGGTCGGGAATACGAC
GAGGAACCCAGCCGGCCCAAGCCCAACGACTTTTCGGATTACCAGCGCAA
GACGACCCGGGTCACGCCCACGCGCGGTGTTCAACGTCCAACTTCCGGTT
CGAGTAGTCCGATTCCATCCAGCACCGCTGCTCCCAGCACGACCAAGTCC
CTGAAGAAGATCACCCTGCATGCCACCTTCAACACGGACTTCCTGGATAG
CTCTTCGCATACCAAGAGTCCATCTTACAGCGCGGTCACCACTCCGCGGC
CCAGCAGCAGCATCACCAGTCGCTTCAGCTTCGGTTCCAATGACTTTTCC
ACCCAGGAAAGGATTCAGCCGACCACCTATAATCCCAATAACGGTGCCTA
TCGCTTCAAGACCACCTCGCCACCCGCCAGTTCCACAAAGGTGACGGGTA
AGGGAGTCCAGGACTTTGAGAAGCGTAGCAAGCCTACATCGGCGGCTGTG
CGGAAACAGAAGCTGGGTCCCCAGGAGTCCAACTTCATCAACCAAAACGA
GTTTGTGGATTTATCGAAAAGCACCAAGCTGCAGCAGCCACAACCCTTCC
AGGTGGCCCAGACTAAGCCCAACCAATTGGAACCACATTACCAGCGACAC
AAGCCACAGGTGACCCGAGTTGGTGGCCAGGAGCCAGCTCCCTTCTCCGC
ACCAAGTTCCAAGCCGCGTTCCTTCACCAGCCGTGGAAGCATCACCTACA
AGGCCACCACCGAGCGTTATGTTGACCAAGAGCTGTACTATCCCACCACC
AGTTCCACAACCAGGGCCAAGGAGGCCTACACACCCACAACCTTCCGGCC
TACCACCTATAAGAAACCGTACGAGCAGAGCTATCAGAGTCAGCAAACCC
ATCGACCCACCCAGGCGGCCACCAAAAAGGCGGCACATTCGGTGACCTCA
GCTCCACCCACTACCACCAATCCGCATGCCAATGTGGATGAGGACGATGG
ACAGTACCATCCGGAGCTGTACGAAAACGACTTCCCTCGCAATCGCATCC
GGTTCCTGCGCAACCGATCCACCAGCTCGACTACCTCGACCACAAGTGCT
CCGGTGGTTTCCAGCAGACAACCACATGGCTTTCAGCAGGCACATCATCA
TCTGAAGAGCCAACAGCAATCCGTCTACCAAAAGGAGCGTGAGCGGGAAC
GGGAACGTGAGCGGGAATCAGACCTCAGCGACGAGGATGAGCTCTTCAAG
ACCGCTCAGTCACTGAACTTTGGAGCGGCCAGCATTAACAAATTGAGGGC
GGACATCTACAAGGCGGAGAAGACCTCACAGCAGTACAACTCGCAGTACA
GTCCGCAGCTGGCATCTAGTCCGCAGGCCAGCAGTAGCAGCAGCAGCAGC
ACTAGCACCACCAGTACCACAACTAGCACCACCACGACCACCACTCGACG
TCCTCCGACCACTGTCAGAACCACCACTACCACCTTTACAACAAGTGCAC
CACCCGTGGAGACCAAGAAGTCGGTTAAGAGCAAAAAGGAGCAGCAGCAG
CTGGAGAAGAAGGACCGTCCAGCTGGCAAGAGGCCACCGCATGCAGACGA
GGACACCAGCTACGATTACGCCTACTACGACACGGACTGAAAGCTTTCTA
GACCAT
BS24301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13643-RC | 2424 | CG13643-PC | 1..2424 | 17..2440 | 12120 | 100 | Plus |
| CG13643-RB | 2424 | CG13643-PB | 1..2424 | 17..2440 | 12120 | 100 | Plus |
| CG13643-RE | 2421 | CG13643-PE | 1..2421 | 17..2440 | 12040 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13643-RC | 3068 | CG13643-RC | 195..2620 | 15..2440 | 12130 | 100 | Plus |
| CG13643-RB | 3248 | CG13643-RB | 375..2800 | 15..2440 | 12130 | 100 | Plus |
| CG13643-RE | 3065 | CG13643-RE | 195..2617 | 15..2440 | 12050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24898133..24899799 | 2440..774 | 8335 | 100 | Minus |
| 3R | 32079331 | 3R | 24899861..24900158 | 773..476 | 1490 | 100 | Minus |
| 3R | 32079331 | 3R | 24903207..24903425 | 274..56 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 24900281..24900487 | 477..271 | 1035 | 100 | Minus |
| 3R | 32079331 | 3R | 24905339..24905380 | 56..15 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2583..2684 | 673..775 | 133 | 67.6 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2849..2908 | 693..753 | 131 | 70.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3588..3628 | 730..770 | 115 | 75.6 | Plus |
BS24301.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 10:12:00 Download gff for
BS24301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13643-RA | 194..2616 | 17..2439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:37:19 Download gff for
BS24301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13643-RB | 377..2799 | 17..2439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:28 Download gff for
BS24301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13643-RB | 377..2799 | 17..2439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:28 Download gff for
BS24301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24898134..24899799 | 774..2439 | 100 | <- | Minus |
| 3R | 24899861..24900157 | 477..773 | 100 | <- | Minus |
| 3R | 24900282..24900486 | 272..476 | 100 | <- | Minus |
| 3R | 24903210..24903424 | 57..271 | 100 | <- | Minus |
| 3R | 24905339..24905378 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:37:19 Download gff for
BS24301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20731061..20731100 | 17..56 | 100 | | Minus |
| arm_3R | 20723856..20725521 | 774..2439 | 100 | <- | Minus |
| arm_3R | 20725583..20725879 | 477..773 | 100 | <- | Minus |
| arm_3R | 20726004..20726208 | 272..476 | 100 | <- | Minus |
| arm_3R | 20728932..20729146 | 57..271 | 100 | <- | Minus |
BS24301.pep Sequence
Translation from 16 to 2439
> BS24301.pep
MLSIINAMIAFLLATTLCSGYGYAQAQLLDEDDDLAFGRPWPTYSLQNMP
KTQFTCHDKILGGYYADPETQCQMFHVCVKLPGVGVQDYRFLCPNTTAFD
QELQICANWLDVDCDKATSFYDNGHLNDLYRNGDESKSANEEEATFHLQR
AETGDIRRSKENHNNNNINNNRGADQKPRHRHNYAQTGGSSSSSSSPKLE
ITQSTKRPISTYYTPTTLGSTTTSTTSTTTTTERSYYNNNYNNNYSNNDD
SKQDLDDIFKGSHSSHFFSNRHGGREYDEEPSRPKPNDFSDYQRKTTRVT
PTRGVQRPTSGSSSPIPSSTAAPSTTKSLKKITLHATFNTDFLDSSSHTK
SPSYSAVTTPRPSSSITSRFSFGSNDFSTQERIQPTTYNPNNGAYRFKTT
SPPASSTKVTGKGVQDFEKRSKPTSAAVRKQKLGPQESNFINQNEFVDLS
KSTKLQQPQPFQVAQTKPNQLEPHYQRHKPQVTRVGGQEPAPFSAPSSKP
RSFTSRGSITYKATTERYVDQELYYPTTSSTTRAKEAYTPTTFRPTTYKK
PYEQSYQSQQTHRPTQAATKKAAHSVTSAPPTTTNPHANVDEDDGQYHPE
LYENDFPRNRIRFLRNRSTSSTTSTTSAPVVSSRQPHGFQQAHHHLKSQQ
QSVYQKERERERERERESDLSDEDELFKTAQSLNFGAASINKLRADIYKA
EKTSQQYNSQYSPQLASSPQASSSSSSSTSTTSTTTSTTTTTTRRPPTTV
RTTTTTFTTSAPPVETKKSVKSKKEQQQLEKKDRPAGKRPPHADEDTSYD
YAYYDTD*
BS24301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13643-PC | 807 | CG13643-PC | 1..807 | 1..807 | 4258 | 100 | Plus |
| CG13643-PB | 807 | CG13643-PB | 1..807 | 1..807 | 4258 | 100 | Plus |
| CG13643-PE | 806 | CG13643-PE | 1..806 | 1..807 | 4235 | 99.8 | Plus |
| CG13643-PD | 819 | CG13643-PD | 1..819 | 1..807 | 4235 | 98.5 | Plus |
| Muc30E-PC | 1702 | CG33300-PC | 661..1226 | 187..782 | 229 | 21.6 | Plus |
