BS24302.complete Sequence
2159 bp assembled on 2011-02-15
GenBank Submission: KX800333
> BS24302.complete
GAAGTTATCAGTCGACATGAGCGAGTACACAAGCATTCTGCAGCGCGAGT
TTCCCAAAATCGACCACGAGCTGCTCACCTATGTCGTTGGCGTGCTCACC
GGAAGCGAGGAGGACTTCGAAAGCGGCGATGACATCTTCGAAGCGGTGGG
CGACATCCTGCAGAGCGTCGACTGTGATAGGTCGGAGGAGAGTGTACGTA
CGCTTTGCGAGCAGTTCCTCAACATCATGAAGAACAACGAGGTCAACGTG
GAGCGAAAGGTTCTCAACGCGCCGGTCAACATCGAGGAGATGGCCAAGAA
CATGGAGCGGCTGGACAAGGATATGCAAAGCATCTGGGTGGCCAACAAAG
ATGGCGCCAATAAAGTGGACTCCAAGAAACTAGGAAAGGCGGAGGCCAAG
CTGCAGCAGAAGCAGGAGAAACGGCAGGAGGTGAACAAACATGGTATGAT
TCCTGTTGCGGTGAAGCTACAAACGGCCACAGCCTCACAGGTGACCAACA
AGAAGAACACCAAGCTGGATCAGAAAGGTCTTAACCGATCCATGGACATC
AAGATCGAAAACTTTGACCTGGCTTTTGGCGAAAAAGTTCTTCTGCAGAA
TGCGAATCTGCTGCTGTCTTACGGACGCCGCTATGGTCTGGTGGGACGCA
ATGGCCTGGGCAAGACTACACTGCTCCGCATGATTGCCGAGCGACAGCTA
CAGATCCCTTCGCACATATCGGTGCTGCACGTGGAGCAGGAGGTGGTTGG
CGATGACACACCAGCAGTGGAGAGTGTGCTGGAATGTGATACTGAGCGAA
CGAGACTTCTGACCCGCGAGAAGGAGATTCTGGCTGCCCTTAACAATGGA
GTTCAGGATGCGACGCTGTCCAATGAGCTGAGCGAGACCTACGCCTCTCT
GCAGAACATCGAGGCGGACAAGGCTGTGGCCCGCGCATCTGTGATACTTA
AGGGCTTGGGATTCGATGCAGATATGCAGCTGCGTCCAACTAAATCCTTC
TCAGGCGGCTGGCGCATGCGTCTTGCTTTGGCCAGGGCACTGTTCTCAAA
ACCCGATCTGTTACTGCTCGATGAGCCGACGAACATGTTAGACATCAAAG
CCATTATTTGGCTGGAAAACTATCTGCAGACATGGGCCACCACCATTCTG
GTAGTTTCTCACGATCGCAACTTCCTGGACACGGTGCCGACAGACATTAT
TCACCTACATTCCCAGGAACTGGAGGCATACAAGGGAAACTATGAACAGT
TCGAGAAGACCAAGACGGAGAAGCTGAAGTCCCAAAGACGTGAATACGAG
GCCCAAATGGCTCACAGAGCTCATGTCCAAGACTTCATCGATCGCTTCCG
ATACAACGCAAACCGTGCCTCGTCTGTGCAATCCAAAATTAAAATGCTCG
AAAAGCTGCCGGAACTAAAGCCAGTGGAAAAGGAGACTGTGGTCACGCTC
AAATTCCCCGAAGTGGAACCCCTTAATCCTCCCGTGCTGGCCATTTCGGA
GGTTACTTTCCGTTACAATCCAGAAGATCCACTGCCCATCTTCAAGGGCG
TCAATCTCTCAGCCACATCGGACTCTCGAATTTGCATTGTCGGAGAAAAC
GGAGCGGGAAAGTCGACGCTGCTGAAGATTATTGTCGGTCAACTGAGCAC
TATTCACGGAAACATTGTCCTGCATCGCGGTCTTCGAATTGGATATTTTG
CGCAGCACCATGTGGACCATCTGAATATGAATGTAACGTGTGTGGGAGTT
TTGGCAGAACTGTTTCCTGGTCGCCCGGACGAAGAGTATCGCCGGCAGTT
GGGCAGCTTCGGCATATCCGGACCACTGGCACTGCAGAGCATTGCCAGTT
TATCTGGAGGACAAAAATCACGAGTGGCCTTAGCAAAGATGTGCATGGCG
GAGCCAAATTTCCTGGTGCTCGATGAGCCGACTAATCACTTGGACATTGA
AACCATTGATGCTTTGGGCCGAGCCATAAATGCCTTTAAGGGCGGCGTAA
TCCTGGTTTCCCACGACGAACGCCTCATTAAGGTCGTCTGCAAGGAACTC
TGGGTGTGTGGCAATCGCACAGTCAGAGCGATCGAAGGTGGTCTGGACGA
GTATAAGCGCGAGGTTTACAAGGAAATCGAAGCTAATAGTTGAAAGCTTT
CTAGACCAT
BS24302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9330-RA | 2127 | CG9330-PA | 1..2127 | 17..2143 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9330-RA | 2384 | CG9330-RA | 130..2257 | 17..2144 | 10625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19587174..19587822 | 586..1234 | 3245 | 100 | Plus |
3L | 28110227 | 3L | 19588123..19588613 | 1408..1898 | 2455 | 100 | Plus |
3L | 28110227 | 3L | 19586535..19586791 | 105..361 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 19586892..19587115 | 362..585 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 19587881..19588055 | 1234..1408 | 860 | 99.4 | Plus |
3L | 28110227 | 3L | 19588829..19588984 | 1989..2144 | 780 | 100 | Plus |
3L | 28110227 | 3L | 19588679..19588772 | 1898..1991 | 470 | 100 | Plus |
3L | 28110227 | 3L | 19586382..19586470 | 17..105 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:58:25 has no hits.
BS24302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:42 Download gff for
BS24302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9330-RA | 128..2253 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:19 Download gff for
BS24302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9330-RA | 130..2255 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:18 Download gff for
BS24302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9330-RA | 130..2255 | 17..2142 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:18 Download gff for
BS24302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19586382..19586469 | 17..104 | 100 | -> | Plus |
3L | 19586535..19586791 | 105..361 | 100 | -> | Plus |
3L | 19586892..19587115 | 362..585 | 100 | -> | Plus |
3L | 19587174..19587821 | 586..1233 | 100 | -> | Plus |
3L | 19587881..19588054 | 1234..1407 | 99 | -> | Plus |
3L | 19588123..19588613 | 1408..1898 | 100 | -> | Plus |
3L | 19588680..19588771 | 1899..1990 | 100 | -> | Plus |
3L | 19588831..19588982 | 1991..2142 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:19 Download gff for
BS24302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19579482..19579569 | 17..104 | 100 | -> | Plus |
arm_3L | 19579635..19579891 | 105..361 | 100 | -> | Plus |
arm_3L | 19579992..19580215 | 362..585 | 100 | -> | Plus |
arm_3L | 19580274..19580921 | 586..1233 | 100 | -> | Plus |
arm_3L | 19580981..19581154 | 1234..1407 | 99 | -> | Plus |
arm_3L | 19581223..19581713 | 1408..1898 | 100 | -> | Plus |
arm_3L | 19581780..19581871 | 1899..1990 | 100 | -> | Plus |
arm_3L | 19581931..19582082 | 1991..2142 | 100 | | Plus |
BS24302.pep Sequence
Translation from 16 to 2142
> BS24302.pep
MSEYTSILQREFPKIDHELLTYVVGVLTGSEEDFESGDDIFEAVGDILQS
VDCDRSEESVRTLCEQFLNIMKNNEVNVERKVLNAPVNIEEMAKNMERLD
KDMQSIWVANKDGANKVDSKKLGKAEAKLQQKQEKRQEVNKHGMIPVAVK
LQTATASQVTNKKNTKLDQKGLNRSMDIKIENFDLAFGEKVLLQNANLLL
SYGRRYGLVGRNGLGKTTLLRMIAERQLQIPSHISVLHVEQEVVGDDTPA
VESVLECDTERTRLLTREKEILAALNNGVQDATLSNELSETYASLQNIEA
DKAVARASVILKGLGFDADMQLRPTKSFSGGWRMRLALARALFSKPDLLL
LDEPTNMLDIKAIIWLENYLQTWATTILVVSHDRNFLDTVPTDIIHLHSQ
ELEAYKGNYEQFEKTKTEKLKSQRREYEAQMAHRAHVQDFIDRFRYNANR
ASSVQSKIKMLEKLPELKPVEKETVVTLKFPEVEPLNPPVLAISEVTFRY
NPEDPLPIFKGVNLSATSDSRICIVGENGAGKSTLLKIIVGQLSTIHGNI
VLHRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGRPDEEYRRQLGSFGI
SGPLALQSIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIETIDAL
GRAINAFKGGVILVSHDERLIKVVCKELWVCGNRTVRAIEGGLDEYKREV
YKEIEANS*
BS24302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9330-PA | 708 | CG9330-PA | 1..708 | 1..708 | 3597 | 100 | Plus |
CG1703-PB | 901 | CG1703-PB | 274..880 | 97..700 | 1166 | 42.9 | Plus |
CG1703-PA | 901 | CG1703-PA | 274..880 | 97..700 | 1166 | 42.9 | Plus |
CG9281-PD | 611 | CG9281-PD | 5..603 | 127..708 | 1055 | 39.3 | Plus |
CG9281-PC | 611 | CG9281-PC | 5..603 | 127..708 | 1055 | 39.3 | Plus |