BS24309.complete Sequence
1469 bp assembled on 2011-02-03
GenBank Submission: KX803199
> BS24309.complete
GAAGTTATCAGTCGACATGGCCCAGACGATGGACGACATGGTCTTCCAGT
GCAGCAATCAAAACTCGATCTATGTGCTGAATGCCAGCTACGGTTCCTAT
GGGGACTATGGCACATATGCGGCAACAAAGCGTGAAATAAATGGCAGCCG
GAGCAGAGCAGCAAATCCAATTGGGTCGACTTGCTCGAGTGGCGTCCTGC
AGCATAAATTCAAAACTTTCGGCAGTGCCGCAGCAACAGCAGCAGCCGCG
GCAGCTGCAGCGCCACCAGCCATGGATGCAGCAGCGGGAGGCGCAGCAAA
CTACGTAAATCCTGTCGCTACATCAATGTCAACCGCAATGTGTTCACCGG
CAACGGCGGCAACGGCGGCCCTGCAAAAACTGTTCAATTGCAGCGTCGGC
GTCGCCTGCCAAAATGTCACTCACGCCCACAGCAACCACACCAACCAAGG
CAGCAGCAGCATCAGCAGCAGCCACATCCACATCAGTGGCAGCAACAACA
ATGCCGCCGCCAGCAACCATAACAATAGCTGCCTGTCGGCGGCAGGCGGA
GTGGGCCTCCAAGGCGCCCGGAATCGGAGCCGGAGTGGCGAATGCCTCGA
TGGCGCGGCGGGAGCGGTTACCTCGCCAGCCGGAGGCGGAGGAGCAGGTG
GCCTCCCTCTGCTCCCAAAGAAGAAATGCACCAATGTCAAATCAGCGCTT
ATTGCCAAGAAGACAAAGTTTCTCAAATATCTCGAAGAAGAAAAATGGCG
CAGCAACGCGGCAGTTCCGGAAGATGCTGGTGCCATCAGCAATGAGGCGG
AGCCATCCACCCCGAGCGGCAACAACAACGGCGGCAACTTGAAAAATCAG
AGCAACAGTCGGGAGGCTGGAAGTGGCACTGGAAGTGGCAGTGGAAGTGG
ATGTGGAAGTGGGGGGCAGCCGAACAAACCGACCAACTGGAGCATGCATA
ATGAGGACACCAGCACGTCGCTGGCCAGCCACCAGCAACTACAACAGCAG
GCGAAATCGAGTTCCGAGCTCTACCAGGAGGCAGCCGACATTTTGGGCCT
GAGTTGCAGCCTCTGTGATAATTGCCGATGCCTGGACTGCCAGAGCGGCT
ACTTTGACTGCGACGACGACGATGAGAGCTACTCAGAGCAATCGCTGATG
GACGACGAGTACGACGAGTTCGACTGCGGTGCGGAGGAGCTGCAGGCGGC
GATGACAGCAGCCCGGCACCAGGATGTGCCCCGGATGCCCTGCTGCCCGC
TGGGGGCGAGTTCCCACCTTGCGCACAAGGTGGACTCCCCGGCCGTACAT
ATGCCCCCGCAATCGGAATCCCTGGGCCATCGGGTGGCCATCGATTTTGA
TTTAATTAACGCCACTTGCAGCCAGGTGCTGCAAAACTGTGAAACATTCA
ACGATTTGAGTCTGCTAGATTCCGCCGCCGGAGCCGAGCGTCCTTTCACG
TAAAAGCTTTCTAGACCAT
BS24309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13594-RB | 1437 | CG13594-PB | 1..1437 | 17..1453 | 7170 | 99.9 | Plus |
| CG13594-RA | 1437 | CG13594-PA | 1..1437 | 17..1453 | 7170 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13594-RB | 2855 | CG13594-RB | 636..2073 | 17..1454 | 7175 | 99.9 | Plus |
| CG13594-RA | 2896 | CG13594-RA | 677..2114 | 17..1454 | 7175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24623673..24624359 | 789..103 | 3420 | 99.9 | Minus |
| 2R | 25286936 | 2R | 24620707..24621070 | 1454..1091 | 1820 | 100 | Minus |
| 2R | 25286936 | 2R | 24621348..24621654 | 1093..787 | 1535 | 100 | Minus |
| 2R | 25286936 | 2R | 24624459..24624543 | 104..20 | 425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2667 | 228..502 | 259 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2427 | 418..529 | 245 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6965 | 318..541 | 239 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2268..2505 | 298..532 | 237 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6880 | 427..534 | 234 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6921 | 312..524 | 232 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2439 | 427..532 | 200 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6836 | 397..532 | 190 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1187 | 427..536 | 188 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1153 | 451..525 | 168 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1598 | 427..529 | 166 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2885 | 280..562 | 151 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1584 | 466..532 | 146 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6818 | 439..532 | 145 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2373 | 459..529 | 132 | 67.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..217 | 452..548 | 118 | 59.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9247 | 452..548 | 118 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6785 | 461..529 | 113 | 69 | Plus |
BS24309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:20 Download gff for
BS24309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 676..2110 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:23 Download gff for
BS24309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 677..2111 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:02 Download gff for
BS24309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 677..2111 | 17..1451 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:02 Download gff for
BS24309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24620710..24621067 | 1094..1451 | 100 | <- | Minus |
| 2R | 24621348..24621651 | 790..1093 | 100 | <- | Minus |
| 2R | 24623673..24624358 | 104..789 | 99 | <- | Minus |
| 2R | 24624460..24624544 | 17..103 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:23 Download gff for
BS24309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20508233..20508590 | 1094..1451 | 100 | <- | Minus |
| arm_2R | 20508871..20509174 | 790..1093 | 100 | <- | Minus |
| arm_2R | 20511196..20511881 | 104..789 | 99 | <- | Minus |
| arm_2R | 20511983..20512067 | 17..103 | 97 | | Minus |
BS24309.pep Sequence
Translation from 16 to 1452
> BS24309.pep
MAQTMDDMVFQCSNQNSIYVLNASYGSYGDYGTYAATKREINGSRSRAAN
PIGSTCSSGVLQHKFKTFGSAAATAAAAAAAAPPAMDAAAGGAANYVNPV
ATSMSTAMCSPATAATAALQKLFNCSVGVACQNVTHAHSNHTNQGSSSIS
SSHIHISGSNNNAAASNHNNSCLSAAGGVGLQGARNRSRSGECLDGAAGA
VTSPAGGGGAGGLPLLPKKKCTNVKSALIAKKTKFLKYLEEEKWRSNAAV
PEDAGAISNEAEPSTPSGNNNGGNLKNQSNSREAGSGTGSGSGSGCGSGG
QPNKPTNWSMHNEDTSTSLASHQQLQQQAKSSSELYQEAADILGLSCSLC
DNCRCLDCQSGYFDCDDDDESYSEQSLMDDEYDEFDCGAEELQAAMTAAR
HQDVPRMPCCPLGASSHLAHKVDSPAVHMPPQSESLGHRVAIDFDLINAT
CSQVLQNCETFNDLSLLDSAAGAERPFT*
BS24309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13594-PB | 478 | CG13594-PB | 1..478 | 1..478 | 2510 | 100 | Plus |
| CG13594-PA | 478 | CG13594-PA | 1..478 | 1..478 | 2510 | 100 | Plus |
| CG3257-PA | 447 | CG3257-PA | 143..422 | 98..374 | 194 | 25.4 | Plus |
