BS24316.complete Sequence
1838 bp assembled on 2011-02-16
GenBank Submission: KX801915
> BS24316.complete
GAAGTTATCAGTCGACATGCACGTGGAGGAGCTGAGAGCCAGCCTGCAGA
GCTTTGGATGGCCGGATTATTTGGTCTTTTGCCTGATGTTGGCCATTTGC
GCCGTTATCGGTATATATTTTTGCCTGCAACTGCGCTTAGAGTCCAGGAA
ACAAAAGGCCAATGGCTCAGAGGAGGCGGCGAGTAGTGCTGCCTCGTATT
TGGTTGGTGGCAGGCAGATGAAGATCTTTCCCATAACCATGTCACTGATA
TCCAGCTTTATATCTGGAATTACACTTTTGGGTACTCCCACAGAGGTTTA
TCTTTATGGTGCTCAGTACATGTACATTATGGGATCGCTGGTTTTAATGG
GCTTCTGCATGTACTACTTCTTCTTGCCGGTCTTTCACGAACTCAATTTG
ATATCCACTTATAAGTATTTGGAACAGCGATATAACCGAAGTTTAAGGCT
TTTCGGATCTGTCATGTTTATTGTGGCTTCGCTACTTTGGCTTCCAATTG
TGATTTATGTACCGGCTATAGCATTCAATCAGGCCACTGGAGTGAACATC
CATATAGTGACGCCCATTGTGTGTGTGGTTTGCATTTTCTATACTTGCAT
TGGAGGTTTGAAGGCGGTGGTTTGGACGGATGTCATCCAAACGTTGATCA
TGTTCGGTGCGATGGCTTTGGTTTTGATTAAGGGAACCCTGGATATCGGC
GGACCTGGAGTTGTGTGGCAGAAGGCCCAAGAAACAGCTCGATTGGAAGT
ACCCAATTTTAGTGCGGATCTAAGTGAGCGGTATACCTTTTATTCCCTGG
TTTTGGGCGGTGTAGCTCATTGGCTCAAGTCAAATGCAATTAGTCAGAAT
ATGATCCAGAGATATTTATCGCTACCCACGCTTCGTGATGCACGGATTGC
AATATGGACATTTATCGCTGGTGTTTTGGCCTTTTTGATGATCTGCGGAT
ATACGGGTCTTTTGATCTATGCCACCTATTCTCAATGTGATCCTTTGGAA
ACGAAGTTGGCCCAGAGAAACGATCAACTTTTGCCACTTTTGGTAATGGA
CACTTTGGGCTCATATCCGGGTTTACCAGGAGTATTTGTAGCCGGTGTTT
TTAGTGCGGCATTGTCTTCGTTATCGACAGGGTTGAACTCTCTATCTGCA
GTCGTTTTGGAAGATTTTGTAAAGACCTTTAGAAAGAGTCCACTGACCGA
GGGACAAACCGCTTTTGTGATGCGCAGTGTGGTCGTTGTATTTGGCATTA
TATTCGTAGCTCTCGTATTTGCCGTGGAAAAATTAGGTGCCGTTCTGCAA
CTGACCATCACACTTTCGTCGGTGGCAAATGGACCACTCTTGGGTATATT
TACCGCCGGAGTTATGTTGCCATGGGTTAATTCTAAAGGAGCTTTGCTCG
GAGGATTCAGTTCACTTATTGTTATGGCCTGGATGTGTGTAAGTGCCCAG
CGGGATCTGGTCACCGGTGATCTCGTCTATAAGAGGAAACCATATTCAAC
GATGGGCTGCAATTATACGTTTGCCGGAGAACCACGCGAGTTTGCCAGCC
TGGCATTAGATGGTGCCATCAGTTCCGTTCCAAGTGCTCCCTTCCAGCTG
TATCGCATATCGTATCTCTATTTCACGCTTTTTGGAGCCCTGGTGACGAT
TGTAGTGGCACTGGTCACAAGTCTCCTCCTCCGGGAGACGGATTTGGATG
GAGTTGACACACGTCTGCTCACACCATTTGTGAGACGCTGGTTAGAGCGA
CGTCGCCATCGCCGATCAAAGATACCAGATTCTGGTCAAAAATCCAGCAA
CAAACAGGAGACGAAAACGTAAAAGCTTTCTAGACCAT
BS24316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9657-RB | 1806 | CG9657-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| CG9657-RA | 1806 | CG9657-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9657-RB | 2557 | CG9657-RB | 132..1938 | 17..1823 | 9035 | 100 | Plus |
| CG9657-RA | 2054 | CG9657-RA | 132..1938 | 17..1823 | 9035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7420119..7421210 | 481..1572 | 5460 | 100 | Plus |
| X | 23542271 | X | 7421270..7421523 | 1570..1823 | 1270 | 100 | Plus |
| X | 23542271 | X | 7418725..7418963 | 17..255 | 1195 | 100 | Plus |
| X | 23542271 | X | 7419771..7419933 | 253..415 | 815 | 100 | Plus |
| X | 23542271 | X | 7419990..7420057 | 414..481 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:15 has no hits.
BS24316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-16 15:10:01 Download gff for
BS24316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9657-RA | 131..1934 | 17..1820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:47 Download gff for
BS24316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9657-RA | 132..1935 | 17..1820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:45 Download gff for
BS24316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9657-RA | 132..1935 | 17..1820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:45 Download gff for
BS24316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7418725..7418963 | 17..255 | 100 | -> | Plus |
| X | 7419774..7419933 | 256..415 | 100 | -> | Plus |
| X | 7419992..7420057 | 416..481 | 100 | -> | Plus |
| X | 7420120..7421210 | 482..1572 | 100 | -> | Plus |
| X | 7421273..7421520 | 1573..1820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:47 Download gff for
BS24316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7315306..7315553 | 1573..1820 | 100 | | Plus |
| arm_X | 7312758..7312996 | 17..255 | 100 | -> | Plus |
| arm_X | 7313807..7313966 | 256..415 | 100 | -> | Plus |
| arm_X | 7314025..7314090 | 416..481 | 100 | -> | Plus |
| arm_X | 7314153..7315243 | 482..1572 | 100 | -> | Plus |
BS24316.pep Sequence
Translation from 16 to 1821
> BS24316.pep
MHVEELRASLQSFGWPDYLVFCLMLAICAVIGIYFCLQLRLESRKQKANG
SEEAASSAASYLVGGRQMKIFPITMSLISSFISGITLLGTPTEVYLYGAQ
YMYIMGSLVLMGFCMYYFFLPVFHELNLISTYKYLEQRYNRSLRLFGSVM
FIVASLLWLPIVIYVPAIAFNQATGVNIHIVTPIVCVVCIFYTCIGGLKA
VVWTDVIQTLIMFGAMALVLIKGTLDIGGPGVVWQKAQETARLEVPNFSA
DLSERYTFYSLVLGGVAHWLKSNAISQNMIQRYLSLPTLRDARIAIWTFI
AGVLAFLMICGYTGLLIYATYSQCDPLETKLAQRNDQLLPLLVMDTLGSY
PGLPGVFVAGVFSAALSSLSTGLNSLSAVVLEDFVKTFRKSPLTEGQTAF
VMRSVVVVFGIIFVALVFAVEKLGAVLQLTITLSSVANGPLLGIFTAGVM
LPWVNSKGALLGGFSSLIVMAWMCVSAQRDLVTGDLVYKRKPYSTMGCNY
TFAGEPREFASLALDGAISSVPSAPFQLYRISYLYFTLFGALVTIVVALV
TSLLLRETDLDGVDTRLLTPFVRRWLERRRHRRSKIPDSGQKSSNKQETK
T*
BS24316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9657-PB | 601 | CG9657-PB | 1..601 | 1..601 | 3054 | 100 | Plus |
| CG9657-PA | 601 | CG9657-PA | 1..601 | 1..601 | 3054 | 100 | Plus |
| CG6723-PA | 587 | CG6723-PA | 3..558 | 2..575 | 1568 | 52.4 | Plus |
| CG42235-PB | 695 | CG42235-PB | 90..692 | 1..595 | 1473 | 48.1 | Plus |
| CG42235-PA | 695 | CG42235-PA | 90..694 | 1..597 | 1453 | 47.9 | Plus |
