BS24321.complete Sequence
1181 bp assembled on 2011-02-01
GenBank Submission: KX805106
> BS24321.complete
GAAGTTATCAGTCGACATGACGACCCCGCTGCAGACACGAATGGCACTGG
CCGAGATTCCCGACCGCCTGGAGGCGCTGCGTATGGCCAACACACCGACG
AACTCCAATCGCCGGACTCCGGATGAGCCGACTCCAGCGGCCATCATAAA
CACTCCGAATGCTAACGGAGGACTGGGACTGCGGGTGGACAACGATGTAA
ACGTGGTGCAGGCCCAGGACTTTGTCTTCTCTCCATTGCCCTCGCCAGAT
GAGCTGGTCATTCGGCAGCGTGGTCGCCGTCGCTTTACCACAACATATTC
TCCAGATAAGGTCAACGGAGGTGGTGGCGCAGGAGGAGGTGCCAGCGGTG
GTTCCTCAATGCGTAGTCCTTTCCAGCGCACGCCCACCAAGAACTTTCAA
CTAACAAGCGGCATGATCCTGCGCAGCTCCCCTCGCAAACGCCTGACCAT
GGGCAGCACTCCGCCAGAGCCCACACCAATGGATACCTACTCGCCCATCA
AGATGGCCACCACCAAGCAACTTTGGCCGGGAACACCAGTTGTAAAGAAG
CTAAAAATGGAGGATAGACCTGTGGGGCAGACGAACACAGATGCGACGCT
ACCATCCCTGTTGCAGGGTCTATCGCAGGAGCAACTAATCGATTTGATCA
TGAACAACATTAAAAGTGCCAGTGATGAGGGAGAAATACGAACGCAGCTG
CCCACGCCAGACATAAGCGCTTTGGAGCAGGATCTGCACCATGCTAAGCG
GCTCATCTTCAAGTCCCTTCCCACCTCCCGGCTGTGCAAGAAAACCGATG
CGGCGGCCTACTCCAAGGCGTCGATGCATCTAAACGAATTTAAGCGGGTG
CTGCAATCGCAGGCCAAGCGCCTGCACGACTCCACTCACTGGGACGCACT
AGTGGACTACGTATCCATGGCCTGGCAGTGCGTGGCTAGTACGCCCAACT
GGGAGAGCCATGCCCACAATGCGGTTCGCCGGCAATGCTTCAAGCTGTTG
GCGTGCTCCTGCTATGCGGCCATTAAGCACGGAGGAATGCGATTGGGTCA
GCTGCGACTCGAGACACTGGAACGCAATTTGCGCGAATGGTCCAAGGACT
ATGAGGACGTGCTGTCCTGTGTGAACGCCCTGCAGCGTACGCTTAACAGC
CGTAGCAGCTTGTAAAAGCTTTCTAGACCAT
BS24321.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5199-RB | 1149 | CG5199-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
| CG5199-RA | 1149 | CG5199-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5199-RB | 1639 | CG5199-RB | 213..1362 | 17..1166 | 5750 | 100 | Plus |
| CG5199-RA | 1643 | CG5199-RA | 217..1366 | 17..1166 | 5750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20451875..20452575 | 717..17 | 3505 | 100 | Minus |
| 3L | 28110227 | 3L | 20450809..20451259 | 1166..716 | 2255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:54:14 has no hits.
BS24321.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:04 Download gff for
BS24321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5199-RA | 214..1360 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:20 Download gff for
BS24321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5199-RA | 217..1363 | 17..1163 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:27 Download gff for
BS24321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5199-RA | 217..1363 | 17..1163 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:27 Download gff for
BS24321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20450812..20451257 | 718..1163 | 100 | <- | Minus |
| 3L | 20451875..20452575 | 17..717 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:20 Download gff for
BS24321.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20443912..20444357 | 718..1163 | 100 | <- | Minus |
| arm_3L | 20444975..20445675 | 17..717 | 100 | | Minus |
BS24321.pep Sequence
Translation from 16 to 1164
> BS24321.pep
MTTPLQTRMALAEIPDRLEALRMANTPTNSNRRTPDEPTPAAIINTPNAN
GGLGLRVDNDVNVVQAQDFVFSPLPSPDELVIRQRGRRRFTTTYSPDKVN
GGGGAGGGASGGSSMRSPFQRTPTKNFQLTSGMILRSSPRKRLTMGSTPP
EPTPMDTYSPIKMATTKQLWPGTPVVKKLKMEDRPVGQTNTDATLPSLLQ
GLSQEQLIDLIMNNIKSASDEGEIRTQLPTPDISALEQDLHHAKRLIFKS
LPTSRLCKKTDAAAYSKASMHLNEFKRVLQSQAKRLHDSTHWDALVDYVS
MAWQCVASTPNWESHAHNAVRRQCFKLLACSCYAAIKHGGMRLGQLRLET
LERNLREWSKDYEDVLSCVNALQRTLNSRSSL*
BS24321.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5199-PB | 382 | CG5199-PB | 1..382 | 1..382 | 1991 | 100 | Plus |
| CG5199-PA | 382 | CG5199-PA | 1..382 | 1..382 | 1991 | 100 | Plus |
