BS24322.complete Sequence
2024 bp assembled on 2011-02-16
GenBank Submission: KX803615
> BS24322.complete
GAAGTTATCAGTCGACATGGAGTTGAGAATTTGTTCCAGCTATTCGCTCT
ACAAGTTTCTCGCCCTGTGCTGCTTTTTGACCATCGTGCTTTTTCTAATA
TATTCATCGAATACTTCTTCGAATACAAATCATGATTTATATCCGCCTAC
TACGCGATTTTCTCGAGTTTCGGTAAAGGCTGAACCGCAGAAATTCTTTG
TGAAAACATCCAAGTGCCATATACCCTATGTGGATCCTTTCAACGACGAA
GCCATGGAGTTGTACAAACCGCAAACACTAATCACCTGCTCGAATGAGAC
CGATCTCATATCAACAACATACAATGAAATTATCAAACGGCATATTCTGC
ACATCGACGATGAAGTCGCTCAAAAATTGCTTAATTTCACAGACAAGGAC
TATAATTGCTTTTACCGCGAAATCAAATATGGAAAGATTGCAGATACCTA
CGACAATCTCAAGGCCAAAAAATATTTCACGAGTGGTTACGAGGTGCCAG
TTCATGTGGAGGGAATGATCGTCGAGTGCCAGACGGCTGATGATCCGATA
GTTGTCCTTCAGAAGGACGCCTTCGCCTTCATCCAGCATCGGCCGTTGCC
CAAGGACTCCATAAGACCCAGGGCAGCTCGGAAGCCAAGCGTGATAATGT
ACGGTATCGACTCTCTTTCCCGAATAAACTTAAGACGCACTATGCCCAAG
GTTTTTAACTTTCTACAGGGCCCAGGATGGTACGAGATGCAAGGATACAA
TAAGGTTGCCGACAACTCATTCCCCAACATACTCGCTATTCTCAGTGGAT
ATTCAGCTAGTACGGCTAAGGAAAATGTCTGCGATACGGATAAACAGGGC
TGCCTGGACGAGATGCCAATGATATGGAAGTATTTCAAGAATGCCAGCTA
TTTGACAGGATACGCGGAGGACGAGAGTAACTCTAATCATTTCAACTACC
TAAAGCCCGGCTTTTCCAAAAAGCCGATGGACTATTACTTTCGCCCATTG
CTTAGAGCACTGGAGTCCGAAATGGATGTGTACCGATTGCCGGAACATGA
CTACATGCGATACTGTTTGGGTCGCCGGATAGCGAATCGTTATATCTACG
ACTATGGCCTACAGTTCACGAAGCGTTTTGTTCACGATCGACCAATTTGG
GGAATGTTTTGGTCGAATCACTTCAGTCACGATGATCCCTTTATGCCATC
AGCAATGCAGGAAAAGGTGCTGGGAGATTTGATCGATATGCATGCGGATG
GGCAATTCGAAGAAATGATAATGATATTTTTCGCCGACCACGGAACCAGA
TTTGGCGATTTGACCTATCTGAAGGAGGGCTTTCTGGAGGAGCGGCTGCC
CATGATGTTTATATATCTGCCCCCGTGGTTTCGTGAAACATATCCATCTT
ATGTAAGGGCACTGGAGTTGAATCAGCACAGGCTTAGTTCCAACTTTGAT
CTTCACAATACGCTGAAACATATCATAGAGATTGGAGGCACCCCAGATGG
TCGAGAGTTACCCAAGTCCTTCGATTGCCCCACCTGTCAGTCGCTATTCT
ATCCCCTGCCGGAGGGTCGAACGTGTTCGGAAGCCGGCATTGAGGAGCAC
TGGTGCACCTGCGAACCCTACAAGATTATCTCGGGACAAGATTGGACGAC
TCCTATTGCCCACAGTGTGATCGATCGAATGAACGAGTATTTCGTTCAAA
AGAACTTAACCAGTCTTTGCAGCAATCTGACGCTAAATTATGTGCATAAG
ACTGAGATAAAAACCGGTCTTAACATCGATTGGCACCAAACACTGATGGA
ATCGGAAACAGCGGTTTATCGTATTAAGTTTAAAGTGAAGCAGAATAGTG
CTGACTTCCAGGCCACAGTGGTATACCATAATTCCACCCAAAATGCTCAA
GTAAATGTGGAGAAAATCAGCAGAACGAATTCATACAAGGAAGACTCCAC
ATGCATCGATGATAAGCTTGCAAAACTATATTGTATTTGCTTTAGTGACC
TCCACTGAAAGCTTTCTAGACCAT
BS24322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18088-RC | 1992 | CG18088-PC | 1..1992 | 17..2008 | 9945 | 99.9 | Plus |
| CG18088-RB | 1992 | CG18088-PB | 1..1992 | 17..2008 | 9945 | 99.9 | Plus |
| CG18088-RA | 1992 | CG18088-PA | 1..1992 | 17..2008 | 9945 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18088-RC | 2628 | CG18088-RC | 35..2027 | 16..2008 | 9950 | 99.9 | Plus |
| CG18088-RB | 2044 | CG18088-RB | 35..2027 | 16..2008 | 9950 | 99.9 | Plus |
| CG18088-RA | 2260 | CG18088-RA | 35..2027 | 16..2008 | 9950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8968771..8970026 | 753..2008 | 6265 | 99.9 | Plus |
| 2L | 23513712 | 2L | 8967569..8968009 | 16..456 | 2205 | 100 | Plus |
| 2L | 23513712 | 2L | 8968079..8968378 | 457..756 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:37 has no hits.
BS24322.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:38 Download gff for
BS24322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18088-RA | 34..2024 | 17..2007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:58 Download gff for
BS24322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18088-RA | 36..2026 | 17..2007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:54 Download gff for
BS24322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18088-RA | 36..2026 | 17..2007 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:54 Download gff for
BS24322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8967570..8968009 | 17..456 | 100 | -> | Plus |
| 2L | 8968079..8968376 | 457..754 | 100 | -> | Plus |
| 2L | 8968773..8970025 | 755..2007 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:58 Download gff for
BS24322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8967570..8968009 | 17..456 | 100 | -> | Plus |
| arm_2L | 8968079..8968376 | 457..754 | 100 | -> | Plus |
| arm_2L | 8968773..8970025 | 755..2007 | 99 | | Plus |
BS24322.pep Sequence
Translation from 16 to 2007
> BS24322.pep
MELRICSSYSLYKFLALCCFLTIVLFLIYSSNTSSNTNHDLYPPTTRFSR
VSVKAEPQKFFVKTSKCHIPYVDPFNDEAMELYKPQTLITCSNETDLIST
TYNEIIKRHILHIDDEVAQKLLNFTDKDYNCFYREIKYGKIADTYDNLKA
KKYFTSGYEVPVHVEGMIVECQTADDPIVVLQKDAFAFIQHRPLPKDSIR
PRAARKPSVIMYGIDSLSRINLRRTMPKVFNFLQGPGWYEMQGYNKVADN
SFPNILAILSGYSASTAKENVCDTDKQGCLDEMPMIWKYFKNASYLTGYA
EDESNSNHFNYLKPGFSKKPMDYYFRPLLRALESEMDVYRLPEHDYMRYC
LGRRIANRYIYDYGLQFTKRFVHDRPIWGMFWSNHFSHDDPFMPSAMQEK
VLGDLIDMHADGQFEEMIMIFFADHGTRFGDLTYLKEGFLEERLPMMFIY
LPPWFRETYPSYVRALELNQHRLSSNFDLHNTLKHIIEIGGTPDGRELPK
SFDCPTCQSLFYPLPEGRTCSEAGIEEHWCTCEPYKIISGQDWTTPIAHS
VIDRMNEYFVQKNLTSLCSNLTLNYVHKTEIKTGLNIDWHQTLMESETAV
YRIKFKVKQNSADFQATVVYHNSTQNAQVNVEKISRTNSYKEDSTCIDDK
LAKLYCICFSDLH*
BS24322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18088-PC | 663 | CG18088-PC | 1..663 | 1..663 | 3593 | 100 | Plus |
| CG18088-PB | 663 | CG18088-PB | 1..663 | 1..663 | 3593 | 100 | Plus |
| CG18088-PA | 663 | CG18088-PA | 1..663 | 1..663 | 3593 | 100 | Plus |
| CG9988-PA | 668 | CG9988-PA | 8..665 | 11..662 | 1840 | 51.7 | Plus |
| CG32985-PA | 618 | CG32985-PA | 22..613 | 60..662 | 1751 | 55.1 | Plus |
