BS24326.complete Sequence
1427 bp assembled on 2011-02-01
GenBank Submission: KX803910
> BS24326.complete
GAAGTTATCAGTCGACATGTCGCGGAAGAATGTCTTAGGTTTGATCAACA
CGATCGTGGCCAACTCCTGCAAGTGCCCCGCCCATTCGCATAACTATGGC
TCAGCAGCTCCAACCGCCTCCCAAACGGGTCGCATGGAATACGCCTTCGA
GATGTCAGCCTCGACTGTTCGATTTGGACCGGGAGTAAGTGCCGAAGTGG
GAGCCGATCTTCGCAACTTGGGAGCTCGGAAGGTTTGTTTGGTCACGGAT
AAAAATGTCGTGCAATTGCCCTCCGTGAAAGTGGCCTTGGATTCACTGGC
TCGTAATGGCATCAACTACGAAGTCTATGATGAAACCCGGGTGGAGCCCA
CGGATGGGAGCATGTGGCATGCCGTGGAGTTTGCGCGCGGCAAGGAGTTC
GATGCATTTCTGGCCATCGGAGGAGGATCTGCCATGGATACAGCCAAGGC
AGCTAATCTTTTTAGCAGTGATGCAAATGCAGAGTTTTTGGATTATGTAA
ACTGCCCAATTGGCAGAGGCAAGGAGATATCCGTAAAACTGAAGCCCCTG
ATTGCGATGCCCACCACTTCGGGAACAGGTTCCGAAACCACTGGAGTAGC
TATATTTGATTACAAGAAGTTGCATGCCAAAACTGGGATTTCCAGCAAGT
TCCTCAAACCTACTTTGGCTGTGATTGATCCTCTGCACACCCTATCCCAG
CCGCAACGCGTGATGGCTTTCGCTGGCTTTGATGTGTTCTGCCATGCCCT
GGAGAGTTTCACGGCGGTGGATTACAGGGAACGCGGTTTGGCGCCCAGTG
ATCCCAGCTTGAGACCCACCTACCAGGGCAGGAACCCAGTGTCGGATGTG
TGGGCACGATTCGCATTGGAGACGATAAGGAAAAACTTTGTGAACGCCAT
TTACCAGCCCGATAACCTAGAAGCCCGATCCCAGATGCACCTGGCTTCCA
CAATGGCTGGCGTGGGATTTGGTAATGCCGGAGTGCACCTGTGTCATGGC
CTTTCCTATCCTATTTCTGGAAATGTGAGGGATTACAAGCCAAAGGGCTA
CTCCGCGGATCACGCTCTTATTCCACACGGCCTATCCGTGGTGATCAGTG
CTCCGGCGGTCTTTGAGTTCACTGCTCCAGCTTGTCCGGATCGGCATTTG
GAGGCTGCCCAGTTGCTGGGCGCAGAAGTGCGAGGTGTCGAAAAAGCAGA
CGCCGGTCGTCTTTTGGCGGACACTGTACGCGGTTTTATGCAACGCGCGG
GCATAGAAAATGGCCTCCGAGAGCTGGGATTCTCCAGCAGCGATATACCC
GCCTTGGTGGAGGGAACCCTGCCCCAGGAAAGGATCACTAAGCTAGCACC
CAGGGCGCAGACGCAGGAAAACCTGTCGCAACTCTTTGAGAAGTCCATGG
AGGTCTATTAAAAGCTTTCTAGACCAT
BS24326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T3dh-RA | 1395 | CG3425-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T3dh-RA | 1959 | CG3425-RA | 29..1423 | 17..1411 | 6975 | 100 | Plus |
| pgc-RA | 1211 | CG32885-RA | 63..569 | 1411..905 | 2535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22330262..22331005 | 1411..668 | 3720 | 100 | Minus |
| 2R | 25286936 | 2R | 22331258..22331634 | 526..150 | 1885 | 100 | Minus |
| 2R | 25286936 | 2R | 22331062..22331205 | 668..525 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 22331848..22331932 | 151..67 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 22331995..22332044 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:54:48 has no hits.
BS24326.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:05 Download gff for
BS24326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T3dh-RA | 14..1406 | 17..1409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:36 Download gff for
BS24326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T3dh-RA | 29..1421 | 17..1409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:40 Download gff for
BS24326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T3dh-RA | 29..1421 | 17..1409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:40 Download gff for
BS24326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22331995..22332044 | 17..66 | 100 | | Minus |
| 2R | 22330264..22331004 | 669..1409 | 100 | <- | Minus |
| 2R | 22331062..22331203 | 527..668 | 100 | <- | Minus |
| 2R | 22331258..22331632 | 152..526 | 100 | <- | Minus |
| 2R | 22331848..22331932 | 67..151 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:36 Download gff for
BS24326.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18217769..18218509 | 669..1409 | 100 | <- | Minus |
| arm_2R | 18218567..18218708 | 527..668 | 100 | <- | Minus |
| arm_2R | 18218763..18219137 | 152..526 | 100 | <- | Minus |
| arm_2R | 18219353..18219437 | 67..151 | 100 | <- | Minus |
| arm_2R | 18219500..18219549 | 17..66 | 100 | | Minus |
BS24326.pep Sequence
Translation from 16 to 1410
> BS24326.pep
MSRKNVLGLINTIVANSCKCPAHSHNYGSAAPTASQTGRMEYAFEMSAST
VRFGPGVSAEVGADLRNLGARKVCLVTDKNVVQLPSVKVALDSLARNGIN
YEVYDETRVEPTDGSMWHAVEFARGKEFDAFLAIGGGSAMDTAKAANLFS
SDANAEFLDYVNCPIGRGKEISVKLKPLIAMPTTSGTGSETTGVAIFDYK
KLHAKTGISSKFLKPTLAVIDPLHTLSQPQRVMAFAGFDVFCHALESFTA
VDYRERGLAPSDPSLRPTYQGRNPVSDVWARFALETIRKNFVNAIYQPDN
LEARSQMHLASTMAGVGFGNAGVHLCHGLSYPISGNVRDYKPKGYSADHA
LIPHGLSVVISAPAVFEFTAPACPDRHLEAAQLLGAEVRGVEKADAGRLL
ADTVRGFMQRAGIENGLRELGFSSSDIPALVEGTLPQERITKLAPRAQTQ
ENLSQLFEKSMEVY*
BS24326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T3dh-PA | 464 | CG3425-PA | 1..464 | 1..464 | 2389 | 100 | Plus |
