BS24328.complete Sequence
479 bp assembled on 2011-02-01
GenBank Submission: KX803332
> BS24328.complete
GAAGTTATCAGTCGACATGTTCAAGTTGGTGGTATTGTCTGCTCTGCTCG
CTGTAGCCGCTGCCCGTCCCGGTCACCTGTTGGAGTCCTCCCCGCTGGTC
TACGCTGCCCCAGCAGCGACGACCATCGTCCAGGAGCCCGTTCTGGCCAA
GGTGGGAGCCGTGGTCAAGAGCGTACCCACTGCCGTCAGCCACCAGAGCC
AGTCGGTGGTGCACAGTCACGCTCATGTTGTCGAGGATGTCGTTGCTCCC
GTGGTGAAGTCCACTCCGGTGGTCAGCTATGCTGCTGCCGCTCCAGTGGT
TCACACCTCCTATGCCGCTGCTCCCGTTGTCCACACCAGTTACGCTGCTC
CTGCTCCCGTTGTTCACACATCCTACGCCGCCGCCGCTCCCGTTCTGGCC
ACATCCTACGCCCAAGTGGCCGCCTCCTCGCCGCTGACCTACACCGCCAC
TGGTGTGTGGTAAAAGCTTTCTAGACCAT
BS24328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13043-RA | 447 | CG13043-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
| CG13063-RA | 390 | CG13063-PA | 1..320 | 17..339 | 695 | 81.7 | Plus |
| CG13044-RA | 468 | CG13044-PA | 103..242 | 122..264 | 245 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13043-RA | 646 | CG13043-RA | 80..527 | 17..464 | 2240 | 100 | Plus |
| CG13063-RA | 544 | CG13063-RA | 46..367 | 15..339 | 705 | 81.8 | Plus |
| CG13044-RA | 624 | CG13044-RA | 168..307 | 122..264 | 245 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16305344..16305791 | 464..17 | 2240 | 100 | Minus |
| 3L | 28110227 | 3L | 16306720..16307028 | 28..339 | 655 | 81.4 | Plus |
| 3L | 28110227 | 3L | 16302807..16302946 | 264..122 | 245 | 79.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:19:08 has no hits.
BS24328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:49 Download gff for
BS24328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13043-RA | 81..520 | 22..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:22 Download gff for
BS24328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13043-RA | 85..524 | 22..461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:48 Download gff for
BS24328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13043-RA | 85..524 | 22..461 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:48 Download gff for
BS24328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16305347..16305786 | 22..461 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:22 Download gff for
BS24328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16298447..16298886 | 22..461 | 100 | | Minus |
BS24328.pep Sequence
Translation from 16 to 462
> BS24328.pep
MFKLVVLSALLAVAAARPGHLLESSPLVYAAPAATTIVQEPVLAKVGAVV
KSVPTAVSHQSQSVVHSHAHVVEDVVAPVVKSTPVVSYAAAAPVVHTSYA
AAPVVHTSYAAPAPVVHTSYAAAAPVLATSYAQVAASSPLTYTATGVW*
BS24328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13043-PA | 148 | CG13043-PA | 1..148 | 1..148 | 725 | 100 | Plus |
| CG13063-PA | 129 | CG13063-PA | 1..127 | 1..130 | 530 | 85.4 | Plus |
| CG13044-PA | 155 | CG13044-PA | 1..155 | 1..148 | 374 | 60.8 | Plus |
| CG13042-PA | 117 | CG13042-PA | 1..102 | 1..103 | 270 | 57.9 | Plus |
| CG13060-PA | 131 | CG13060-PA | 1..128 | 1..143 | 212 | 48.3 | Plus |
