BS24330.complete Sequence
1802 bp assembled on 2011-02-03
GenBank Submission: KX801439
> BS24330.complete
GAAGTTATCAGTCGACATGTCGGGCTTACGCAAAACATCCATTGCGCTGA
TGAGGCGCTCCACATCCAGCACCACCATACTGCCGCATTCCGGGGGCGTT
GGTGGTGCCGTGTCGCCGCCCAGCAGCGGAGTGGGCGTGGCCACGGAAAT
TGAAAAATCAATTGCAATGCAACGGCTGCGGACGGGCGAGTCGTCGAATC
CGAAGAAATTAAATGTCAGCCAACAGCCCGTTACATCAGTAGCAACAACT
AGGACTACAGCAAGCTCACTACCAGCAGAAACCACTTCTTCACCGGCAGC
TGCAGTGCGTCCTTATTCGGAAGTACCGGGTCCATACCCCTTGCCACTGA
TTGGCAACTCCTGGCGCTTCGCTCCACTAATAGGAACATACAAAATCAGC
GACTTGGACAAGGTCATGAATGAGCTGCATGTCAACTATGGGAAGATGGC
CAAAGTGGGCGGTCTCATTGGTCATCCCGATCTGCTGTTCGTCTTCGATG
GCGATGAGATTCGTAACATATTCAAGAAGGAGGAGGCGATGCCGCATCGA
CCGTCGATGCCCTCACTGCGCCACTACAAGGGCGACCTGCGACGCGATTT
CTTTGGCGATGTGGCCGGCCTAATTGGCGTGCATGGCCCCAAGTGGGAGG
CCTTCAGACAGGAGGTGCAGCACATCCTGCTGCAGCCGCAGACCGCCAAG
AAGTACATTCCGCCGCTAAATGACATTGCCAGCGAGTTTATGGGCCGTAT
CGAGCTGATGCGCGACGAAAAGGACGAGCTGCCAGCCAATTTCCTGCACG
AGCTCTACAAATGGGCCTTGGAATCTGTCGGTCGCGTTTCCCTGGACACG
AGATTGGGCTGTTTGTCCCCCGAGGGCAGCGAAGAGGCCCAACAGATCAT
AGAGGCTATCAACACATTTTTCTGGGCCGTTCCGGAATTGGAGCTGCGAA
TGCCGCTATGGCGAATATATCCCACCAAGGCATACAGGAGCTTCGTCAAG
GCTTTGGATCAGTTCACAGCAATTTGCATGAAGAACATTGGCAAGACCAT
GGACAAGGCCGATGCCGATGAGGCTAGAGGATTGTCCAAATCCGAGGCGG
ATATATCCATTGTGGAGCGGATAGTGCGAAAGACGGGCAATCGCAAACTG
GCTGCCATTTTGGCACTGGATTTGTTTTTGGTTGGAGTCGATACTACCTC
TGTGGCAGCCTCCTCCACAATCTATCAGCTGGCCAAAAACCCAGATAAAC
AGAAAAAACTCTTCGATGAACTGCAGAAGGTGTTTCCCCATCGAGAGGCG
GACATCAACCAGAATGTCCTGGAGCAAATGCCCTACCTGCGAGCCTGTGT
AAAGGAAACTCTACGAATGCGACCCGTGGTGATTGCCAATGGACGGAGTC
TTCAGTCGGATGCTGTCATCAATGGTTACCACGTGCCCAAAGGCACACAC
GTTATCTTTCCCCATTTGGTTGTTTCAAACGATCCCGCATATTTCCCAGA
ACCCAAGCGTTTTCTGCCCGAGCGCTGGCTGAAACAGTCCACGGATGCAG
CTGGCTGCCCCCATGCCAACCAAAAAATTCACCCATTCGTGAGTTTGCCC
TTTGGCTTTGGGCGTCGCATGTGCGTGGGTCGTCGGTTCGCCGAAATCGA
GTTGCACACGCTGCTGGCCAAGATCTTCCGCAAATACAAGGTCTCGTACA
ATTCCGGAGAGTTTGTGTACCGTGTGAACTCCACGTACATTCCGCAGTCG
CCTCTGAATTTCAAACTAACGCTGAGGGACGAGTGAAAGCTTTCTAGACC
AT
BS24330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp49a1-RE | 1770 | CG18377-PE | 1..1770 | 17..1786 | 8850 | 100 | Plus |
Cyp49a1-RD | 1770 | CG18377-PD | 1..1770 | 17..1786 | 8850 | 100 | Plus |
Cyp49a1-RA | 1770 | CG18377-PA | 1..1770 | 17..1786 | 8850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp49a1-RE | 2591 | CG18377-RE | 485..2254 | 17..1786 | 8850 | 100 | Plus |
Cyp49a1-RD | 2297 | CG18377-RD | 191..1960 | 17..1786 | 8850 | 100 | Plus |
Cyp49a1-RA | 2351 | CG18377-RA | 245..2014 | 17..1786 | 8850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10455925..10456127 | 219..17 | 1015 | 100 | Minus |
2R | 25286936 | 2R | 10451223..10451418 | 1020..825 | 980 | 100 | Minus |
2R | 25286936 | 2R | 10450979..10451153 | 1195..1021 | 875 | 100 | Minus |
2R | 25286936 | 2R | 10450745..10450914 | 1365..1196 | 850 | 100 | Minus |
2R | 25286936 | 2R | 10455522..10455696 | 384..210 | 845 | 98.9 | Minus |
2R | 25286936 | 2R | 10455284..10455451 | 549..382 | 840 | 100 | Minus |
2R | 25286936 | 2R | 10449880..10450004 | 1672..1548 | 625 | 100 | Minus |
2R | 25286936 | 2R | 10452088..10452204 | 747..631 | 585 | 100 | Minus |
2R | 25286936 | 2R | 10449687..10449802 | 1786..1671 | 580 | 100 | Minus |
2R | 25286936 | 2R | 10450421..10450526 | 1550..1445 | 530 | 100 | Minus |
2R | 25286936 | 2R | 10452297..10452379 | 631..549 | 415 | 100 | Minus |
2R | 25286936 | 2R | 10450592..10450671 | 1444..1365 | 400 | 100 | Minus |
2R | 25286936 | 2R | 10451923..10452000 | 824..747 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1102..1163 | 233..294 | 121 | 66.1 | Plus |
BS24330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:17 Download gff for
BS24330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp49a1-RE | 465..2233 | 17..1785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:40 Download gff for
BS24330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp49a1-RA | 245..2013 | 17..1785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:29 Download gff for
BS24330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp49a1-RA | 245..2013 | 17..1785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:29 Download gff for
BS24330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10451223..10451418 | 825..1020 | 100 | <- | Minus |
2R | 10451923..10451999 | 748..824 | 100 | <- | Minus |
2R | 10452088..10452204 | 631..747 | 100 | <- | Minus |
2R | 10452298..10452378 | 550..630 | 100 | <- | Minus |
2R | 10455284..10455449 | 384..549 | 100 | <- | Minus |
2R | 10455523..10455686 | 220..383 | 100 | <- | Minus |
2R | 10449688..10449800 | 1673..1785 | 100 | <- | Minus |
2R | 10449880..10450001 | 1551..1672 | 100 | <- | Minus |
2R | 10450421..10450526 | 1445..1550 | 100 | <- | Minus |
2R | 10450592..10450670 | 1366..1444 | 100 | <- | Minus |
2R | 10450745..10450914 | 1196..1365 | 100 | <- | Minus |
2R | 10450979..10451153 | 1021..1195 | 100 | <- | Minus |
2R | 10455925..10456127 | 17..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:40 Download gff for
BS24330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6342789..6342954 | 384..549 | 100 | <- | Minus |
arm_2R | 6338728..6338923 | 825..1020 | 100 | <- | Minus |
arm_2R | 6339428..6339504 | 748..824 | 100 | <- | Minus |
arm_2R | 6339593..6339709 | 631..747 | 100 | <- | Minus |
arm_2R | 6339803..6339883 | 550..630 | 100 | <- | Minus |
arm_2R | 6337193..6337305 | 1673..1785 | 100 | <- | Minus |
arm_2R | 6337385..6337506 | 1551..1672 | 100 | <- | Minus |
arm_2R | 6337926..6338031 | 1445..1550 | 100 | <- | Minus |
arm_2R | 6338097..6338175 | 1366..1444 | 100 | <- | Minus |
arm_2R | 6338250..6338419 | 1196..1365 | 100 | <- | Minus |
arm_2R | 6338484..6338658 | 1021..1195 | 100 | <- | Minus |
arm_2R | 6343028..6343191 | 220..383 | 100 | <- | Minus |
arm_2R | 6343430..6343632 | 17..219 | 100 | | Minus |
BS24330.pep Sequence
Translation from 16 to 1785
> BS24330.pep
MSGLRKTSIALMRRSTSSTTILPHSGGVGGAVSPPSSGVGVATEIEKSIA
MQRLRTGESSNPKKLNVSQQPVTSVATTRTTASSLPAETTSSPAAAVRPY
SEVPGPYPLPLIGNSWRFAPLIGTYKISDLDKVMNELHVNYGKMAKVGGL
IGHPDLLFVFDGDEIRNIFKKEEAMPHRPSMPSLRHYKGDLRRDFFGDVA
GLIGVHGPKWEAFRQEVQHILLQPQTAKKYIPPLNDIASEFMGRIELMRD
EKDELPANFLHELYKWALESVGRVSLDTRLGCLSPEGSEEAQQIIEAINT
FFWAVPELELRMPLWRIYPTKAYRSFVKALDQFTAICMKNIGKTMDKADA
DEARGLSKSEADISIVERIVRKTGNRKLAAILALDLFLVGVDTTSVAASS
TIYQLAKNPDKQKKLFDELQKVFPHREADINQNVLEQMPYLRACVKETLR
MRPVVIANGRSLQSDAVINGYHVPKGTHVIFPHLVVSNDPAYFPEPKRFL
PERWLKQSTDAAGCPHANQKIHPFVSLPFGFGRRMCVGRRFAEIELHTLL
AKIFRKYKVSYNSGEFVYRVNSTYIPQSPLNFKLTLRDE*
BS24330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp49a1-PE | 589 | CG18377-PE | 1..589 | 1..589 | 3054 | 100 | Plus |
Cyp49a1-PD | 589 | CG18377-PD | 1..589 | 1..589 | 3054 | 100 | Plus |
Cyp49a1-PA | 589 | CG18377-PA | 1..589 | 1..589 | 3054 | 100 | Plus |
Cyp49a1-PC | 415 | CG18377-PC | 1..415 | 175..589 | 2154 | 99.5 | Plus |
Cyp301a1-PA | 553 | CG8587-PA | 41..551 | 73..585 | 1152 | 43.9 | Plus |