BS24332.complete Sequence
2696 bp assembled on 2011-02-15
GenBank Submission: KX804107
> BS24332.complete
GAAGTTATCAGTCGACATGAAGGCAGTACCCAGGACGCCGATGCGTGTCG
TCCCGAAAACTCCGCGGGTGCATCAAACGGTGGAGAAACAGCGACGAGAC
ACCTCCGACAAGGCCAGGGATCCAGTGAATGTGTTCTGTCGAGTGCGGCC
ACTACAATCCGACGCAGATCTCACCTCCCTAAGGGTCAAGAACTCCACGA
CGATCGCACTGAATCCGCAGGATCAGCTGCTGCAGCATCACAAGCCACAC
AACGGCGCCCAGCGCGAGGTTCAGTACATATTCAAGCACGTTTTCCAGCC
GGATGCCACGCAGCAGGATGTGTACGCAGCTGTGGCCCAGCCGTTGGTGG
AGAACCTACTGAAAGGCCGAAACAGTCTGCTTTTCACCTACGGCGTGACT
GGAAGTGGAAAAACGTACACCATGACCGGCAACCTGCGACACCGCGGCAT
CATGCCGCGCTGCCTGGACGTGCTCTTTCGCACCATTTCAGATTACCAGG
CCAAGAAGTTCGTCTTCAAGCCGGACAAGCTTAATGGCTTCGAGATCCTG
TCCGAAGAGGATGCGCTTTTGGAGCGCCAACACGAGATGAACCAGCGTTT
TGCTGGCTCAGGACGATTTGCCTTCAGGCACAAGGACTCGGATCCGGAAA
TTGCATCCCAGGCCTCCGTGGAGCCAATTCCGCTGCTGGGTTTGGATGAG
GACAACATGTACTCGGTGTTTGTCACCTATATTGAAATTTACAATAACAG
CGTCTACGACCTCCTTGAGGACTCGGGTATACAGAAGACTTTGCAGAGCA
AAATCATTCGTGAAGATGCCAATCGACACATGTTCGTCCACGGCGTCACA
GAGGTGGAGGTCAAGACCGTGGAGGACGCCCTCGAGGTCTTTCAAATGGG
CCAGAAGCGCAAACGAATGGGACACACTGTTCTCAATGCAGAATCCAGTA
GGAGTCACTCGGTGTTCAATATACGCTTGGTGCAGGCGCCCACTGATAGC
CAGGGTGAGAATGTGGTTCAGGACCGGCAAAACATCACAGTGAGTCAACT
GTCCCTGGTGGATCTGGCGGGCAGTGAGCGATCCTCAAGGACCAAGAACA
CCGGTGTGCGACTCCGTGAGGCGGGCAACATCAATAATTCGCTGATGACG
CTGCGCACTTGCCTGGAATATCTGCGCGAGAACCAACTCGCGGCTAGCAA
TGGATTGGCACCCAAGAAGGTCCCCTATCGAGACTCCAAGATCACACACA
TGTTTAAAAACTACTTCGATGGCGAAGGCCAGGTGTCCATGATTGTGTGC
ATCAACCCAAGAATTGAGGACTATGATGAGAATATGCAAGTGATGAAGTT
CGCCGAGATGACCCAGGAGGTGCAAATTGCTCGGGCGACTCCTATGAAGC
AAGATTTGGGTCTGACTCCCGGCCGTCGCAAGGCCAACAAGCTGTTCAAG
ATTGCCGTTAATAATCTAAACGAGCTGGGCATTCCTGAGGCCAAGGATTT
GGAGGTGGACGTGGGTTTGGTGTACAGTTTGGGACCCGATTTTCCCGCCT
ACGAAATGGACAGTCCCGAGGCACAGATCAAAATCCGCGAGCTAATGCAT
TATCTGGAGCAGCGCATAGAAAAGCGAAAGAAGCTGCGTGCCAACTTGGA
CATTAAATGTGACAGCTTCCGGCAGATGCTGATGAACCTTGACCGCGACA
ATCTTCAGCTGCGCACGGAGCTCGCCTCCTTAAAGGCTGTTTACAAGCAG
GAGCGCGATCGCAGTGCGGCACTCGAGAAGAAGGTTCGCATCCACGAGAG
CTCCATTGACGTGCTTAACAATACGCTAAGCAAGCAAGAACGGCAGATTG
AAGAGCTGACTTTCAAGCTGAACGAGAAGGAGAATATGCTCACCCAAAAG
GAGCACGAGAAGGAAAAGCAAAAGAAGAAGTTCAGCTCCAAGCTGGCCGT
TGAGTCGGACAAAAATAAGCGAGAGTTTGAACTAAAGCTGCGTGAACAGC
GAGTGAAATTGCAGGAACGCATGCGCATCAAGGACGAGAAGTTGCGATTG
GTCTCCAACATTCTGCAGTCCGAAGATCTGCCCAGTTTGCCGCGGTCACA
GAGCTCGGAAAACATACTTAATGAGAAAGATCGCGGTGCATATACGGCGC
GCACGGAGGAGTCCTCGGTGCCAGCTACACGAACAGATATATATGCAACG
CCACGTCATGGTGCAGCAGCGGCCAACAATCGGCATAGACGCTCTCGATC
CGCAGGCGACAAGTGGCTGGAGCATCGGGCAGCTAATCCCGTTCCGCTTG
GCACTATTATGCAGCCGTATCTGAAGAATCGCAAATCCGTAACGAAACTA
ACCGACTTGAAGGAGTTGACTGCTCACGGAACTACGAAGTACTGTCTCGT
CTCGCAGGATGCGGATACGGATGGCGATGTGGAGACGAAGCTGTATAAGG
GCAATGTAATTCCCACTTGTGGCGGTGGTGCCCAAGTTGTGTTCAACGAT
GTGGAGTGCCTCAAGCAGAAGTCACCGGTTCACTCGCCCACGCGAAAGCG
ACCCAGCAATGGCAACATTTCGGCTCTGGGCGGCGGTGCAGTGCCCAGCA
CGGTCACCTCAGCCCAGGACGTAGCCTCCCGCTGCAATCTCGGCATTGAG
GGACACAGCAGCAAGAAGTCGAAAATCTAAAAGCTTTCTAGACCAT
BS24332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pav-RA | 2664 | CG1258-PA | 1..2664 | 17..2680 | 13320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pav-RA | 3207 | CG1258-RA | 143..2810 | 15..2682 | 13340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4242948..4243707 | 28..787 | 3800 | 100 | Plus |
| 3L | 28110227 | 3L | 4244752..4245303 | 1659..2210 | 2760 | 100 | Plus |
| 3L | 28110227 | 3L | 4243765..4244314 | 787..1336 | 2750 | 100 | Plus |
| 3L | 28110227 | 3L | 4245364..4245836 | 2210..2682 | 2365 | 100 | Plus |
| 3L | 28110227 | 3L | 4244374..4244698 | 1336..1660 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:02:30 has no hits.
BS24332.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:46 Download gff for
BS24332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 143..2804 | 17..2678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:59 Download gff for
BS24332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 145..2806 | 17..2678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:25 Download gff for
BS24332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pav-RA | 145..2806 | 17..2678 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:25 Download gff for
BS24332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4242940..4243706 | 17..786 | 99 | -> | Plus |
| 3L | 4243765..4244314 | 787..1336 | 100 | -> | Plus |
| 3L | 4244375..4244696 | 1337..1658 | 100 | -> | Plus |
| 3L | 4244752..4245302 | 1659..2209 | 100 | -> | Plus |
| 3L | 4245364..4245832 | 2210..2678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:59 Download gff for
BS24332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4242940..4243706 | 17..786 | 99 | -> | Plus |
| arm_3L | 4243765..4244314 | 787..1336 | 100 | -> | Plus |
| arm_3L | 4244375..4244696 | 1337..1658 | 100 | -> | Plus |
| arm_3L | 4244752..4245302 | 1659..2209 | 100 | -> | Plus |
| arm_3L | 4245364..4245832 | 2210..2678 | 100 | | Plus |
BS24332.pep Sequence
Translation from 16 to 2679
> BS24332.pep
MKAVPRTPMRVVPKTPRVHQTVEKQRRDTSDKARDPVNVFCRVRPLQSDA
DLTSLRVKNSTTIALNPQDQLLQHHKPHNGAQREVQYIFKHVFQPDATQQ
DVYAAVAQPLVENLLKGRNSLLFTYGVTGSGKTYTMTGNLRHRGIMPRCL
DVLFRTISDYQAKKFVFKPDKLNGFEILSEEDALLERQHEMNQRFAGSGR
FAFRHKDSDPEIASQASVEPIPLLGLDEDNMYSVFVTYIEIYNNSVYDLL
EDSGIQKTLQSKIIREDANRHMFVHGVTEVEVKTVEDALEVFQMGQKRKR
MGHTVLNAESSRSHSVFNIRLVQAPTDSQGENVVQDRQNITVSQLSLVDL
AGSERSSRTKNTGVRLREAGNINNSLMTLRTCLEYLRENQLAASNGLAPK
KVPYRDSKITHMFKNYFDGEGQVSMIVCINPRIEDYDENMQVMKFAEMTQ
EVQIARATPMKQDLGLTPGRRKANKLFKIAVNNLNELGIPEAKDLEVDVG
LVYSLGPDFPAYEMDSPEAQIKIRELMHYLEQRIEKRKKLRANLDIKCDS
FRQMLMNLDRDNLQLRTELASLKAVYKQERDRSAALEKKVRIHESSIDVL
NNTLSKQERQIEELTFKLNEKENMLTQKEHEKEKQKKKFSSKLAVESDKN
KREFELKLREQRVKLQERMRIKDEKLRLVSNILQSEDLPSLPRSQSSENI
LNEKDRGAYTARTEESSVPATRTDIYATPRHGAAAANNRHRRSRSAGDKW
LEHRAANPVPLGTIMQPYLKNRKSVTKLTDLKELTAHGTTKYCLVSQDAD
TDGDVETKLYKGNVIPTCGGGAQVVFNDVECLKQKSPVHSPTRKRPSNGN
ISALGGGAVPSTVTSAQDVASRCNLGIEGHSSKKSKI*
BS24332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pav-PA | 887 | CG1258-PA | 1..887 | 1..887 | 4528 | 100 | Plus |
| sub-PB | 628 | CG12298-PB | 80..479 | 28..452 | 429 | 30.5 | Plus |
| sub-PA | 628 | CG12298-PA | 80..479 | 28..452 | 429 | 30.5 | Plus |
| Klp31E-PE | 1047 | CG5300-PE | 14..561 | 37..703 | 390 | 25.4 | Plus |
| Klp31E-PC | 1048 | CG5300-PC | 14..559 | 37..688 | 390 | 25.1 | Plus |
