BS24336.complete Sequence
1853 bp assembled on 2011-02-16
GenBank Submission: KX804654
> BS24336.complete
GAAGTTATCAGTCGACATGCAGAAAATGCCCTCGCAAATTCTGAACGACG
GCAGCAGCGTCAGCTTGAATAGCGCCAGTATGAACATGGCCAATACGCCC
AATAGTATAACGGTAAAGACCGCCTACAATGGCCAGATTATCATTACCAC
CATCAACAAGAATATCTCATACGAGGAGCTGTGCTACGAGATTCGCAACA
TTTGTCGATTTCCTCTGGATCAGCCATTTACCATCAAATGGGTAGATGAG
GAAAACGATCCCTGCACCATATCAACGAAAATGGAATTGGACGAGGCCAT
ACGACTTTACGAAATGAACTTCGATTCCCAGTTAGTCATTCATGTATTTC
CCAATGTTCCTCAAGCGCCGGGATTGTCTTGCGATGGCGAAGATCGCAGC
ATCTATCGACGCGGTGCTCGACGCTGGCGCAAGTTGTATCGCGTCAACGG
ACACATCTTCCAGGCCAAGCGTTTCAACCGGCGTGCTTTCTGTGCCTACT
GCCAGGATCGAATCTGGGGTTTGGGACGTCAGGGTTTCAAGTGCATCCAG
TGCAAGCTGTTGGTGCACAAGAAGTGCCATAAGCTTGTGCAGAAGCACTG
CACCGACCAGCCGGAGCCGCTGGTCAAGGAGCGGGCGGAGGAGTCCAGTG
ACCCTATACCGGTGCCTTTGCCGCCACTTCCCTACGAAGCGATGAGCGGC
GGAGCCGAAGCCTGCGAGACGCACGACCATGCGCACATAGTGGCGCCACC
GCCACCGGAGGATCCATTGGAGCCGGGCACTCAGCGCCAGTATTCGCTGA
ACGACTTCGAGCTGATACGGGTCATCGGACGCGGCAGCTATGCCAAGGTG
CTAATGGTGGAGCTACGACGCACACGGCGCATCTACGCCATGAAGGTGAT
CAAGAAGGCGCTGGTCACCGACGACGAGGACATCGACTGGGTGCAAACGG
AGAAGCATGTGTTCGAGACGGCCTCGAACCACCCGTTCCTGGTCGGATTG
CACTCGTGCTTCCAGACGCCCTCGCGGCTCTTCTTTGTCATCGAGTTTGT
GCGCGGTGGCGATTTGATGTACCACATGCAGCGGCAACGGCGGCTGCCCG
AGGAGCACGCCCGTTTCTATGCAGCCGAGATCAGTTTGGCGCTGAATTTC
CTTCACGAGAAGGGCATCATTTATCGCGATCTGAAGCTGGACAACGTGCT
GCTGGATCACGAGGGCCACATCAAGCTAACGGATTACGGCATGTGTAAGG
AGGGCATTCGACCTGGAGACACCACCTCCACATTCTGCGGTACACCCAAT
TACATTGCCCCTGAGATACTGAGGGGCGAGGACTATGGCTTCTCGGTGGA
CTGGTGGGCACTAGGCGTCTTGCTCTATGAGATGTTGGCCGGCCGTAGTC
CGTTTGATCTGGCAGGAGCCTCAGAGAATCCCGATCAGAACACTGAGGAC
TATCTGTTCCAAGTGATCCTGGAGAAGACGATTCGTATACCACGCTCGCT
GAGCGTTCGTGCGGCCTCTGTCTTAAAAGGTTTCCTCAACAAGAATCCCG
CTGACCGTTTGGGCTGCCATCGGGAGTCCGCGTTCATGGATATCGTCAGC
CATCCCTTCTTTAAGAATATGGATTGGGAATTGCTTGAGCGCAAACAGGT
CACGCCACCATTCAAGCCACGCTTAGACTCAGATCGCGACCTGGCCAATT
TCCCGCCCGAGTTCACCGGCGAGGCCGTACAGTTGACCCCGGATGATGAT
CATGTCATTGACAATATCGATCAATCCGAGTTCGAGGGCTTTGAGTATGT
AAACCCCTTGCTGATGTCTCTGGAGGATTGCGTCTGAAAGCTTTCTAGAC
CAT
BS24336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aPKC-RA | 1821 | CG42783-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| aPKC-RC | 1821 | CG42783-PC | 1..1821 | 17..1837 | 9105 | 100 | Plus |
| aPKC-RD | 1827 | CG42783-PD | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aPKC-RA | 3240 | CG42783-RA | 343..2163 | 17..1837 | 9105 | 100 | Plus |
| aPKC-RC | 2392 | CG42783-RC | 221..2041 | 17..1837 | 9105 | 100 | Plus |
| aPKC-RD | 3320 | CG42783-RD | 151..1767 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14947894..14948851 | 1438..481 | 4790 | 100 | Minus |
| 2R | 25286936 | 2R | 14961568..14961774 | 223..17 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 14947642..14947839 | 1633..1436 | 990 | 100 | Minus |
| 2R | 25286936 | 2R | 14961386..14961508 | 344..222 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 14946704..14946820 | 1749..1633 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 14946516..14946603 | 1837..1750 | 440 | 100 | Minus |
| 2R | 25286936 | 2R | 14948917..14949002 | 481..396 | 430 | 100 | Minus |
| 2R | 25286936 | 2R | 14949373..14949425 | 396..344 | 265 | 100 | Minus |
| 3R | 32079331 | 3R | 29045330..29045610 | 1114..1394 | 265 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:31 has no hits.
BS24336.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:42 Download gff for
BS24336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aPKC-RA | 320..2139 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:58 Download gff for
BS24336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aPKC-RC | 221..2040 | 17..1836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:40 Download gff for
BS24336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aPKC-RC | 221..2040 | 17..1836 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:40 Download gff for
BS24336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14946517..14946603 | 1750..1836 | 100 | <- | Minus |
| 2R | 14946704..14946819 | 1634..1749 | 100 | <- | Minus |
| 2R | 14947642..14947836 | 1439..1633 | 100 | <- | Minus |
| 2R | 14947894..14948850 | 482..1438 | 100 | <- | Minus |
| 2R | 14948917..14949002 | 396..481 | 100 | <- | Minus |
| 2R | 14949374..14949424 | 345..395 | 100 | <- | Minus |
| 2R | 14961386..14961506 | 224..344 | 100 | <- | Minus |
| 2R | 14961568..14961774 | 17..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:58 Download gff for
BS24336.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10834022..10834108 | 1750..1836 | 100 | <- | Minus |
| arm_2R | 10834209..10834324 | 1634..1749 | 100 | <- | Minus |
| arm_2R | 10835147..10835341 | 1439..1633 | 100 | <- | Minus |
| arm_2R | 10835399..10836355 | 482..1438 | 100 | <- | Minus |
| arm_2R | 10836422..10836507 | 396..481 | 100 | <- | Minus |
| arm_2R | 10836879..10836929 | 345..395 | 100 | <- | Minus |
| arm_2R | 10848891..10849011 | 224..344 | 100 | <- | Minus |
| arm_2R | 10849073..10849279 | 17..223 | 100 | | Minus |
BS24336.pep Sequence
Translation from 16 to 1836
> BS24336.pep
MQKMPSQILNDGSSVSLNSASMNMANTPNSITVKTAYNGQIIITTINKNI
SYEELCYEIRNICRFPLDQPFTIKWVDEENDPCTISTKMELDEAIRLYEM
NFDSQLVIHVFPNVPQAPGLSCDGEDRSIYRRGARRWRKLYRVNGHIFQA
KRFNRRAFCAYCQDRIWGLGRQGFKCIQCKLLVHKKCHKLVQKHCTDQPE
PLVKERAEESSDPIPVPLPPLPYEAMSGGAEACETHDHAHIVAPPPPEDP
LEPGTQRQYSLNDFELIRVIGRGSYAKVLMVELRRTRRIYAMKVIKKALV
TDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTPSRLFFVIEFVRGGDL
MYHMQRQRRLPEEHARFYAAEISLALNFLHEKGIIYRDLKLDNVLLDHEG
HIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALG
VLLYEMLAGRSPFDLAGASENPDQNTEDYLFQVILEKTIRIPRSLSVRAA
SVLKGFLNKNPADRLGCHRESAFMDIVSHPFFKNMDWELLERKQVTPPFK
PRLDSDRDLANFPPEFTGEAVQLTPDDDHVIDNIDQSEFEGFEYVNPLLM
SLEDCV*
BS24336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aPKC-PA | 606 | CG10261-PA | 1..606 | 1..606 | 3249 | 100 | Plus |
| aPKC-PC | 606 | CG10261-PC | 1..606 | 1..606 | 3249 | 100 | Plus |
| aPKC-PD | 608 | CG10261-PD | 1..608 | 1..606 | 3114 | 95.9 | Plus |
| aPKC-PG | 951 | CG42783-PG | 455..951 | 110..606 | 2681 | 100 | Plus |
| aPKC-PJ | 958 | CG42783-PJ | 462..958 | 110..606 | 2681 | 100 | Plus |
