BS24339.complete Sequence
1658 bp assembled on 2011-02-02
GenBank Submission: KX804655
> BS24339.complete
GAAGTTATCAGTCGACATGGCAAAACTGTTTGTGGTTTTTGCCGTTTTGG
CTCTGGCGGCCTTTAACGAAGCCAGTGCCAGCGATCCGCTCCTGCGATAC
AAGCGACAGGCCACCACCGAGGAGACCAAGAAGGAGGAGTCCTTCGAGAA
GGAGCTGTGCAAGGACAAGGACGCCGGCGAGTGGTTCCGCCTGGTGGCCG
GCGAGGGCGACAATTGCCGCGACGTCATCCAATGTACCTCATCGGGCCTG
CAAGCCATCCGTTGCCCTGCTGGTCTGTACTTCGATATCGAGAAGCAGAC
TTGCGACTGGAAGGAGTCGGTGAAGAACTGCAAGTCCAAGAACAAGGAGC
GCCGCGTGAAGCCCCTGCTCCATACGGATGAGCCCCTGTGCCAGGACGGA
TTCCTCGCCTGCGGCGATGGAAACTGCATTGAGCGCGGACTCTTCTGCAA
CGGCGAGAAGGATTGCTCGGATGGATCCGATGAGAACACCTGTGATATCG
ACAACGATCCCAACCGTGCCCCGCCCTGCGATCCCGCCGTGTGCGTCCTG
CCCGATTGCTTCTGCTCGGAGGATGGTACATCGATTCCCGGCGACCTGCC
CGCCAAGGATGTGCCCATGATGATCACCATCACGTTCGACGACGCCATCA
ACAACAACAACATCGAGCTGTACAAGGAGATCTTCAAGGATCGCAAGAAC
CCCAACGGCTGCTCCATCAAGGCCACCTACTTCGTGTCGCACAAGTACAC
CAACTACTCGGCGGTGCAGGAGACGGCACGCAAAGGACACGAGATCGCAG
TGCACTCGATCACGCACAACGACGAGGAGCGTTTCTGGTCGAACGCCACC
GTGGACGACTGGGCCAAGGAGATGGCCGGCATGAGGATCATTACGGAGAA
GTTCGCCAACATTACGGATAACTCGGTGGTGGGCGTGCGTGCTCCCTACC
TGCGCGTGGGCGGCAACAACCAGTTCACCATGATGGAGGAGCAGGCCTTC
CTGTACGACTCCACCATCACCGCTCCGCTGTCGAACCCGCCACTATGGCC
CTACACCATGTACTTCCGGATGCCCCACCGCTGCCACGGCAACCTGCAGA
GCTGCCCCACCCGATCCCACGCCGTGTGGGAGATGGTGATGAACGAGCTG
GACCGTCGCGAGGATCCCGTCAACGATGAGTACCTGCCCGGCTGCGCCAT
GGTGGACTCCTGCTCGAACATCCTGACCGGTGACCAGTTCTACAACTTCC
TGAACCACAACTTCGACCGTCACTACGACCAGAACCGCGCTCCCCTGGGT
CTGTACTTCCACGCCGCCTGGCTGAAGAACAATCCCGAGTTCCTCGACGC
CTTCCTCTACTGGATCGACGAGATCCTGGCCAACCACAACGACGTGTACT
TCGTGACCATGACCCAGGTGATCCAGTGGATGCAGAATCCACGCACCATC
AGCGAGGTCAAGAACTTTGAGCCCTGGAGGGAGAAGTGCGTGGTCGAGGG
CAAGCCCGCCTGCTGGGTGCCCAACACCTGCAAGCTGACCTCCAAGGAGG
TTCCCGGGGAGACCATCAACCTGCAGACCTGCGTCCGATGCCCCAACAAC
TACCCATGGGTCAGCGATCCCACTGGCGATGGTTTCTTCTAAAAGCTTTC
TAGACCAT
BS24339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| serp-RC | 1626 | CG32209-PC | 1..1626 | 17..1642 | 8115 | 99.9 | Plus |
| serp-RB | 1626 | CG32209-PB | 1..1626 | 17..1642 | 8115 | 99.9 | Plus |
| verm-RG | 1578 | CG8756-PG | 373..1370 | 440..1437 | 975 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| serp-RC | 2226 | CG32209-RC | 227..1852 | 17..1642 | 8115 | 99.9 | Plus |
| serp-RB | 2541 | CG32209-RB | 542..2167 | 17..1642 | 8115 | 99.9 | Plus |
| verm-RG | 2165 | CG8756-RG | 487..1484 | 440..1437 | 975 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19701351..19702499 | 1642..494 | 5730 | 99.9 | Minus |
| 3L | 28110227 | 3L | 19705809..19706059 | 494..244 | 1255 | 100 | Minus |
| 3L | 28110227 | 3L | 19690714..19691645 | 1437..506 | 900 | 73.6 | Minus |
| 3L | 28110227 | 3L | 19706224..19706399 | 245..70 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 19707420..19707474 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2392..2526 | 623..754 | 146 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6479 | 649..712 | 130 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2460..2538 | 646..726 | 130 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1484..1584 | 612..712 | 127 | 58.4 | Plus |
BS24339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:16 Download gff for
BS24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| serp-RB | 536..2159 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:44 Download gff for
BS24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| serp-RB | 542..2165 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:42 Download gff for
BS24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| serp-RB | 542..2165 | 17..1640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:42 Download gff for
BS24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19701353..19702498 | 495..1640 | 99 | <- | Minus |
| 3L | 19705809..19706058 | 245..494 | 100 | <- | Minus |
| 3L | 19706225..19706397 | 72..244 | 100 | <- | Minus |
| 3L | 19707420..19707474 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:44 Download gff for
BS24339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19694453..19695598 | 495..1640 | 99 | <- | Minus |
| arm_3L | 19698909..19699158 | 245..494 | 100 | <- | Minus |
| arm_3L | 19699325..19699497 | 72..244 | 100 | <- | Minus |
| arm_3L | 19700520..19700574 | 17..71 | 100 | | Minus |
BS24339.pep Sequence
Translation from 16 to 1641
> BS24339.pep
MAKLFVVFAVLALAAFNEASASDPLLRYKRQATTEETKKEESFEKELCKD
KDAGEWFRLVAGEGDNCRDVIQCTSSGLQAIRCPAGLYFDIEKQTCDWKE
SVKNCKSKNKERRVKPLLHTDEPLCQDGFLACGDGNCIERGLFCNGEKDC
SDGSDENTCDIDNDPNRAPPCDPAVCVLPDCFCSEDGTSIPGDLPAKDVP
MMITITFDDAINNNNIELYKEIFKDRKNPNGCSIKATYFVSHKYTNYSAV
QETARKGHEIAVHSITHNDEERFWSNATVDDWAKEMAGMRIITEKFANIT
DNSVVGVRAPYLRVGGNNQFTMMEEQAFLYDSTITAPLSNPPLWPYTMYF
RMPHRCHGNLQSCPTRSHAVWEMVMNELDRREDPVNDEYLPGCAMVDSCS
NILTGDQFYNFLNHNFDRHYDQNRAPLGLYFHAAWLKNNPEFLDAFLYWI
DEILANHNDVYFVTMTQVIQWMQNPRTISEVKNFEPWREKCVVEGKPACW
VPNTCKLTSKEVPGETINLQTCVRCPNNYPWVSDPTGDGFF*
BS24339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| serp-PC | 541 | CG32209-PC | 1..541 | 1..541 | 2999 | 100 | Plus |
| serp-PB | 541 | CG32209-PB | 1..541 | 1..541 | 2999 | 100 | Plus |
| verm-PG | 525 | CG8756-PG | 30..523 | 45..540 | 1803 | 61.6 | Plus |
| verm-PI | 555 | CG8756-PI | 25..553 | 15..540 | 1779 | 58.3 | Plus |
| verm-PH | 531 | CG8756-PH | 30..529 | 45..540 | 1759 | 60 | Plus |
