BS24341.complete Sequence
1802 bp assembled on 2011-02-16
GenBank Submission: KX802234
> BS24341.complete
GAAGTTATCAGTCGACATGGCGATGACTCTGAACATTGGCTCGATGAAGC
TGACAAAGTGGCAGCTGGCGCTCATCCTTGGAACTCCCCTGGCCATTGGA
CTGGGCACCTATGCGGTGAAGAGCTGGACGGCTGCGTCCAAGGAGTTGGA
CGGGGAGAAGAAGAGACCAAAGGCCAAGATCGAGAAGCAGGCCATCTCCC
TGGACGGCACCGCACCGGACCAGGAGCTAGAGCGCAATCAAAAGTCCGCT
GAGCTGGGCGAGAAGCTGTCGCCTCTTAAGGAGGCCAACAACTACAAGAC
GGAGGGTAACAACTGCTACAGGAATGGGAAGTACGATGAGGCCATTAAAT
TCTATGACAAGGCCATCGACAAGTGTCCCAAGGAGCACCGCACTGACATG
GCCATCTTCTACCAGAACCGCGCCGCCTCTTACGAGATGCTCAAGAAGTG
GTCCAACGTCAAGGAGGACTGCACAGCCTCGCTGGAGTTCAATCCTCGTT
ACGCCAAGGCATATTATCGTCGTGCCCGTGCTCACGAAGCCACCAAGGAT
ATGAACGAGTGCTTGGACGATGTCACAGCCACCTGTATCCTGGAGATGTT
CCAAAATAATCAAACTATCATGTTCGCTGACCGTGTGCTCAAGGAGACCG
GCCGACTGGACGCCGAGAAGGGTATGCGCAATCGGGTGCCAGTCGTGCCG
TCGGCTTGCTTCGTAAACACCTACACGCGTTCCTTCATCGCGGATCCGCT
GCAGACCATGAAAGTCCCAGCCCCTAAATCCGATGCACCCCCAAAGGGTT
TCCTGCGCGCCCACCTCGCTTTCCTCGAGGAGAAGTACGAGGAAATTATT
CCCGCCTGCACCGAAGAGATCGAATCCTCCGAGGCCGAAGCACAGTACAA
AGTGGAGGCTCTGCTTATGCGGGGAACTTTCCATCTGCTGTGCGGCTCCT
ATGTAGAAAGCCAGCAGGACTTTGATGCTATTATAGCTAATGACTATGCT
GATCCCAACTTGCGTGCGTATGCCTACATAAAGCGGGCAGCTCTCTACAT
CCAGCTGGATCAGCGCGAAAAGGGTATAGCCGATTTTGCTGAGGCGGAAC
GCCTGAACCCAGAGAACCCAGATGTGTACCACCAGCGCGCCCAGATACTT
CTGCTGCTGGAGCAGATAGAGCCCGCCTTGGCCGAGTTCGAAAAGGCGGT
GAGCATTGCACCCAACCACGCCATCGCCTTCGTCCAGAAGTGCTATGCCG
AGTACCGACTATCCCTCCTGGCCGGCGACCAGCGGCGCTTGGAGAGCGTA
ATGCACACCTTCCAAAATGCCATCGAGCGTTTCCCGAGCTGCGTTGAGTG
CTATAGTCTAACGGCTCAGGTGTTGGCCGACCAGCAACAGTTTACCCAGG
CGGAGGAATACTACAAAAAGGCCATGGTATTGGCGCCAACAAATCCTGCA
CTTATCGTTCACCAGGCCATCATGGTGCTTCAGTGGCGCGGAGACATTAA
TTTGGCTGTCCAGCTGCTCAACAAGGCGATCGAAGTAGATCCCAAATGCG
AGCTGGCCTACGAGACACTCGGAACAGTCGAAGTTCAGCGGGCGCAACTC
ACACGGGCCGTCGAGCTTTTTGAAAAGGCACTGCTTTATGCCAAGAGTCA
GGCGGAGTTGGTGCACGTTTACTCGCTGCGCAACGCGGCAGTGGCCCAAA
TCAACGTCACCAAAAAGCTGGGTATCGACATGAACTCAGTGTCGGCAATG
GCCCAATCCGGATTGATGGCCCAGGGCGTTGCATAGAAGCTTTCTAGACC
AT
BS24341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom70-RC | 1770 | CG6756-PC | 1..1770 | 17..1786 | 8850 | 100 | Plus |
| Tom70-RB | 1770 | CG6756-PB | 1..1770 | 17..1786 | 8850 | 100 | Plus |
| Tom70-RA | 1770 | CG6756-PA | 1..1770 | 17..1786 | 8850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom70-RC | 2297 | CG6756-RC | 260..2030 | 17..1787 | 8855 | 100 | Plus |
| Tom70-RB | 2237 | CG6756-RB | 181..1951 | 17..1787 | 8855 | 100 | Plus |
| Tom70-RA | 2218 | CG6756-RA | 181..1951 | 17..1787 | 8855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12037155..12038130 | 992..17 | 4880 | 100 | Minus |
| 2L | 23513712 | 2L | 12036270..12037065 | 1787..992 | 3980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:44:03 has no hits.
BS24341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:18:44 Download gff for
BS24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom70-RC | 84..1853 | 17..1786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:13 Download gff for
BS24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom70-RA | 181..1950 | 17..1786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:52 Download gff for
BS24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom70-RA | 181..1950 | 17..1786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:52 Download gff for
BS24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12036271..12037064 | 993..1786 | 100 | <- | Minus |
| 2L | 12037155..12038130 | 17..992 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:13 Download gff for
BS24341.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12036271..12037064 | 993..1786 | 100 | <- | Minus |
| arm_2L | 12037155..12038130 | 17..992 | 100 | | Minus |
BS24341.pep Sequence
Translation from 16 to 1785
> BS24341.pep
MAMTLNIGSMKLTKWQLALILGTPLAIGLGTYAVKSWTAASKELDGEKKR
PKAKIEKQAISLDGTAPDQELERNQKSAELGEKLSPLKEANNYKTEGNNC
YRNGKYDEAIKFYDKAIDKCPKEHRTDMAIFYQNRAASYEMLKKWSNVKE
DCTASLEFNPRYAKAYYRRARAHEATKDMNECLDDVTATCILEMFQNNQT
IMFADRVLKETGRLDAEKGMRNRVPVVPSACFVNTYTRSFIADPLQTMKV
PAPKSDAPPKGFLRAHLAFLEEKYEEIIPACTEEIESSEAEAQYKVEALL
MRGTFHLLCGSYVESQQDFDAIIANDYADPNLRAYAYIKRAALYIQLDQR
EKGIADFAEAERLNPENPDVYHQRAQILLLLEQIEPALAEFEKAVSIAPN
HAIAFVQKCYAEYRLSLLAGDQRRLESVMHTFQNAIERFPSCVECYSLTA
QVLADQQQFTQAEEYYKKAMVLAPTNPALIVHQAIMVLQWRGDINLAVQL
LNKAIEVDPKCELAYETLGTVEVQRAQLTRAVELFEKALLYAKSQAELVH
VYSLRNAAVAQINVTKKLGIDMNSVSAMAQSGLMAQGVA*
BS24341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom70-PC | 589 | CG6756-PC | 1..589 | 1..589 | 3015 | 100 | Plus |
| Tom70-PB | 589 | CG6756-PB | 1..589 | 1..589 | 3015 | 100 | Plus |
| Tom70-PA | 589 | CG6756-PA | 1..589 | 1..589 | 3015 | 100 | Plus |
| unc-45-PA | 947 | CG2708-PA | 10..109 | 87..188 | 211 | 42.2 | Plus |
| CG14894-PB | 263 | CG14894-PB | 65..189 | 61..185 | 173 | 29.6 | Plus |
