BS24344.complete Sequence
2897 bp assembled on 2011-03-14
GenBank Submission: KX803237
> BS24344.complete
GAAGTTATCAGTCGACATGATGTTCACGGGCACCAATCAGCAGCAGGACA
CGCGGTTCAGCGACAAGGAGAAGAAGCTGATGAAGCAAATGAAGTTCGGC
GATTGCCTGAACAAGAGGGTGGATATGTCGAAAGTCAAGCTGGACGTACT
GCGTCCGTGGATCAGCAAGAAGATCACCGACATCCTGCACATCGAGGACG
ACGTGGTCGTCGAGTTTGTCTACAATCAGCTGGAGGAGGAGAAGTATCCG
TGCCCCAAGAAAATGCAGATCAATATGACGGGCTTCTTGAACGGCCGAAA
TGCCCGCCAGTTTATGGGTGAACTTTGGGCCCTGCTGCTTTCGGCACAGG
AAAGCGATTCGGGTATACCAGCGGAGTTTATACAGCAGAAAAAGGACGAG
ATACTCAAACGGGAGGAGGAACAGCGGCAGCGGGATCGATCGAGATCCCG
TTCGCGTTCCCGCTCCCAACGAGACAGTTCTAGGCGAGATCGGCAGCGTG
ACCGCTCCAAATCCAAGTCCCGCTCCAGATCCCGCTCAATGAAGCCGGCC
AACAACAACGGTTCGGTGCCCAGTGCCGCACGAGAAGCGGCCGCCAATGC
GGCTGCCAAAATCCGTAAACGCGGCTCCTCCTCCGCCGCGCGTCCCGGCT
CCAGGGAGCGGAGATCCAGCCGACGACCACGTTCTCGTTCACGTTCACGC
TCGCGAACCGCCGGCAAAAAGACAGGCTCGGTGGAGCCCGCACCCGCCAA
GACTGTCAACGGCCGCCACTCGACGGACAAGTCCTCGCCGGTACCGCCGG
CCTCCAAGAACAAGTCGCGCTCCCGTTCGCATTCCCGGTCGCGATCGCCG
CGCAGTCGATCTCGATCGCCCAGCGCCAAGCGGTCACGTTCCCGCAGTTC
CTCGCGACGCAGTCGCCGACGAGGACGCTCCAGCAGCATATCTTTGTCGC
CGGAGCGCAACCAGGATCAGTTTGAGCACCGACGCAACAAGAACAGTGTG
CAAAACAAGCGGCAATATCGCAACAATCGCGGGGACTCGGCTAGTTCAAT
GGAGCGCGGTAACGATCGAGGCAGGCAGTTTGGCGGTGGCGGAGGTGGTC
GTCGAGGTGGCAGACGCTTCTCCCCGCGAGGACGCAGTCCGATGCGACAG
GATAATGGCGGTGGCAACGGCGGCAATCGCTTTCAGCGATCCAATTCGCG
TCGCAGGTCGAGATCCAGGCGGCTATCACGCTCGCCTATGCGTTATTCTC
GCTCTCCAAGACGCTTCAACAACCGTCGCCGTTCGCCGATGATGAACTTT
AGAGGTGGAGGACGTGGTGGCGGGCGTGGCGGCGGACATCGGCAGATGTG
GCAGCATCGCGGCGGATCGCCCAACTTCCGCGGTGGCGGGCGCATCCACT
GGCAGGCCAGACACAGTCCTGGCGGCGGAGGACGCGGAGGGGGAGGCGGA
ATGGGTCGCTTCGACAGGCGCCAGTCGCCGCAACAGAATCGCTATAATCG
CGACCACCGCCAGTCGCCAATGCAGCAGAATCAGCCGTTCCGCAAGCAAT
TCTCCCCGCATCAGGGACCGGGACGTCGCTTCTCGTCGCCGCAGCAACGA
CGAAATTCAAGAGATCGTCGCCCCAACTCAAGGGAAAGGCGCAGCTCACC
GGGCGGTGGTGGCGGTCACATGAATCGGTGGGACAACCCGCCGCCTGCAC
GAAACCGGCGCTCATCATCGGGAAGCTCGGCAGGTGGACGGCAACAGCGA
CAGCGCAGTGCCAGTCCGCCGGAGAAACGGCGTAGTAGCCATAGTCGCAG
TCGCAGCCTGAGTCGCAATCGAAGCCGCAGTCGCTCCAGTTCGCAACACA
GTCGCAAGCGCGAGAGTCCAATTGGGCGCTCGTCGGTGGAGTATGCTGGC
CCGGCGGTGAACACCATCGATCTCTGTCGCGAGGAGCAGCAGCGCAAAAA
CAAGCCAGAAACGATCATAGTGCTGGACGAGGGTCCAGCCGTGCGCAGCA
GCTATGCCAGTCTGTCCCGCACGCCCTCACCGTTCCTTAAGCCCCACGAG
CGTCTAGCCGCAGCCAAGGCAGCTGCTGCTGCGTCGGCGGCGGTACCAAA
GAAATCCCGCGATCAGAGCCAGAGCAGCAGTTCGGATAGCAGTGCCGAGA
GCGATGATAGCGAGGAGCAGCCGCGTCGCAAGAAGCAGCCAACCAACATG
GAGACTTCCAAGGGCAAGAAGGAGAAGGTACGGCGCAGCTCGGAGAGCTC
AACCAGCAGCGAACAGAGTGACGACGAGGACAACTCCAGTGGGGATGAGA
GGCTCAAGAAGAAGCTGCAGCAAAGGAAGAGCAAGGAGGCGGCGGCTTTA
AAGGGAAAAGAGAAGGAGCATGAGAAGGAGAAGGACAAGCGGCGCTCGGA
CAAGAAGTCCAAGCGGGGCGCAATCTCCAGCGGCGATGAGGAGTCGACGA
GCAGTCGCAAGCGCGGTCACAAGAAGACGCGTCGGGACGAGGCTGGCGAC
AACAGCGATTCCGAGGACGAGCATGTGCCCAAGAAAAAGCGCAAGAAGGC
GAAGAAGCCGGCGGATTCCAGTGACAGCGACTCAGAGGCCTCCTCCAAGC
GCAAGAAGCATAAGAAACACAAGAAGCACAGCAAGAAGAGCAAGAAGCAT
AAGAAGCACAAGCGGAAGTGCAGTGCCGGCAAGTCGCGGGCGGACAGCAG
TTCCCAGGGCAGCAGCGACGAGGATGAGCAGTTGCCGCACTCGGTTGCGG
CCAAGCGGAATGGAAACGCTGGCAAGCTGGCGCTACTGTTGCCGGGCGCC
TCCGGAGCCGGTGTCATCAACGAGGACCTCGAGAAGCAGCTGCGGGAACG
GGCCCTCAAATCGATGAAGAAGCTGGACTGAAAGCTTTCTAGACCAT
BS24344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SRm160-RA | 2865 | CG11274-PA | 1..2865 | 17..2881 | 14325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:29:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SRm160-RA | 3862 | CG11274-RA | 433..3298 | 17..2882 | 14330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13037423..13038658 | 28..1263 | 6180 | 100 | Plus |
| 3L | 28110227 | 3L | 13039404..13040412 | 1874..2882 | 5045 | 100 | Plus |
| 3L | 28110227 | 3L | 13038728..13039340 | 1263..1875 | 3065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:29:24 has no hits.
BS24344.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-14 09:58:40 Download gff for
BS24344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SRm160-RA | 428..3291 | 17..2880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:33 Download gff for
BS24344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SRm160-RA | 433..3296 | 17..2880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:49 Download gff for
BS24344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SRm160-RA | 433..3296 | 17..2880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:49 Download gff for
BS24344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13037423..13038658 | 28..1263 | 100 | -> | Plus |
| 3L | 13038729..13039339 | 1264..1874 | 100 | -> | Plus |
| 3L | 13039405..13040410 | 1875..2880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:33 Download gff for
BS24344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13030523..13031758 | 28..1263 | 100 | -> | Plus |
| arm_3L | 13031829..13032439 | 1264..1874 | 100 | -> | Plus |
| arm_3L | 13032505..13033510 | 1875..2880 | 100 | | Plus |
BS24344.pep Sequence
Translation from 16 to 2880
> BS24344.pep
MMFTGTNQQQDTRFSDKEKKLMKQMKFGDCLNKRVDMSKVKLDVLRPWIS
KKITDILHIEDDVVVEFVYNQLEEEKYPCPKKMQINMTGFLNGRNARQFM
GELWALLLSAQESDSGIPAEFIQQKKDEILKREEEQRQRDRSRSRSRSRS
QRDSSRRDRQRDRSKSKSRSRSRSMKPANNNGSVPSAAREAAANAAAKIR
KRGSSSAARPGSRERRSSRRPRSRSRSRSRTAGKKTGSVEPAPAKTVNGR
HSTDKSSPVPPASKNKSRSRSHSRSRSPRSRSRSPSAKRSRSRSSSRRSR
RRGRSSSISLSPERNQDQFEHRRNKNSVQNKRQYRNNRGDSASSMERGND
RGRQFGGGGGGRRGGRRFSPRGRSPMRQDNGGGNGGNRFQRSNSRRRSRS
RRLSRSPMRYSRSPRRFNNRRRSPMMNFRGGGRGGGRGGGHRQMWQHRGG
SPNFRGGGRIHWQARHSPGGGGRGGGGGMGRFDRRQSPQQNRYNRDHRQS
PMQQNQPFRKQFSPHQGPGRRFSSPQQRRNSRDRRPNSRERRSSPGGGGG
HMNRWDNPPPARNRRSSSGSSAGGRQQRQRSASPPEKRRSSHSRSRSLSR
NRSRSRSSSQHSRKRESPIGRSSVEYAGPAVNTIDLCREEQQRKNKPETI
IVLDEGPAVRSSYASLSRTPSPFLKPHERLAAAKAAAAASAAVPKKSRDQ
SQSSSSDSSAESDDSEEQPRRKKQPTNMETSKGKKEKVRRSSESSTSSEQ
SDDEDNSSGDERLKKKLQQRKSKEAAALKGKEKEHEKEKDKRRSDKKSKR
GAISSGDEESTSSRKRGHKKTRRDEAGDNSDSEDEHVPKKKRKKAKKPAD
SSDSDSEASSKRKKHKKHKKHSKKSKKHKKHKRKCSAGKSRADSSSQGSS
DEDEQLPHSVAAKRNGNAGKLALLLPGASGAGVINEDLEKQLRERALKSM
KKLD*
BS24344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SRm160-PA | 954 | CG11274-PA | 1..954 | 1..954 | 4905 | 100 | Plus |
| CG9915-PC | 820 | CG9915-PC | 21..593 | 108..779 | 336 | 28.7 | Plus |
| CG9915-PB | 820 | CG9915-PB | 21..593 | 108..779 | 336 | 28.7 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 243..1034 | 123..907 | 329 | 23.5 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 243..1034 | 123..907 | 329 | 23.5 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 146..1023 | 88..932 | 323 | 20.9 | Plus |
| CG9915-PC | 820 | CG9915-PC | 66..578 | 384..906 | 248 | 24.4 | Plus |
| CG9915-PB | 820 | CG9915-PB | 66..578 | 384..906 | 248 | 24.4 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 8..430 | 543..897 | 201 | 23.7 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 46..325 | 664..940 | 183 | 27 | Plus |
| CG9915-PC | 820 | CG9915-PC | 78..457 | 531..913 | 177 | 23.9 | Plus |
| CG9915-PB | 820 | CG9915-PB | 78..457 | 531..913 | 177 | 23.9 | Plus |
| CG9915-PC | 820 | CG9915-PC | 55..411 | 538..917 | 173 | 22.3 | Plus |
| CG9915-PB | 820 | CG9915-PB | 55..411 | 538..917 | 173 | 22.3 | Plus |
