BS24346.complete Sequence
1643 bp assembled on 2011-02-15
GenBank Submission: KX802342
> BS24346.complete
GAAGTTATCAGTCGACATGCTAAAAGTTCGCAGTGCTCTATCATTAATTC
AGTCGCAAAAAGCGACTCTCTCGCTCGCCACTCAAAAGCGCTGGCAAACT
AATGTGGCGACTGCAGAAGCTAGAGAGGATTCGGAATGGCTGCAGGCTAA
GCCATTTGAGCAGATCCCTCGACTCAACATGTGGGCATTGTCGATGAAAA
TGTCCATGCCGGGTGGGAAATACAAGAACATGGAACTGATGGAGATGTTT
GAGGCGATGAGACAGGACTACGGCGATATATTCTTTATGCCAGGTATTAT
GGGTAACCCACCATTCCTAAGCACCCACAATCCCCAGGACTTCGAGGTGG
TATTTCGCAACGAGGGTGTGTGGCCCAATCGTCCAGGCAACTATACATTG
CTCTACCACCGCGAGGAGTACAGGAAGGACTTCTACCAGGGCGTCATGGG
CGTCATTCCGACGCAGGGCAAGCCATGGGGCGACTTTAGAACCGTCGTTA
ATCCCGTGCTTATGCAGCCAAAAAATGTGCGATTGTATTACAAGAAGATG
TCGCAAGTCAACCAGGAGTTTGTTCAGCGCATTCTCGAACTGAGAGATCC
CGATACTCTTGAGGCTCCCGACGACTTCATAGACACCATCAACCGCTGGA
CCTTGGAATCCGTATCCGTGGTGGCCCTGGATAAGCAACTGGGTTTGCTC
AAGAACTCAAATAAGGAAAGCGAGGCCCTCAAGCTTTTCCACTACCTGGA
TGAGTTCTTTATAGTATCCATTGATCTGGAAATGAAGCCCTCGCCCTGGC
GCTACATTAAAACTCCCAAGTTGAAGCGATTGATGCGAGCTTTGGATGGT
ATTCAGGAAGTAACTCTGGCCTACGTTGATGAGGCTATAGAACGGCTGGA
TAAGGAGGCCAAGGAGGGCGTGGTGCGTCCGGAGAATGAACAAAGTGTGC
TCGAGAAACTGCTGAAGGTAGACAGAAAGGTGGCCACTGTTATGGCCATG
GATATGCTAATGGCAGGAGTTGATACGACATCGAGCACCTTTACAGCACT
ATTGCTGTGCCTTGCCAAGAATCCCGAGAAGCAGGCCAGGCTCAGGGAGG
AGGTGATGAAGGTGCTGCCCAACAAGAATTCCGAATTCACTGAAGCATCG
ATGAAGAACGTTCCCTATTTGCGTGCCTGCATAAAGGAATCCCAGCGATT
GCATCCCCTGATTGTGGGAAATGCTCGCGTCCTTGCCAGAGATGCTGTCC
TCAGTGGATACCGAGTGCCAGCTGGAACTTACGTGAACATTGTTCCCCTG
AATGCCCTGACCAGGGATGAGTACTTCCCACAGGCATCTGAGTTCCTGCC
GGAACGCTGGCTGCGAAGTCCCAAGGACTCGGAATCGAAGTGTCCGGCAA
ATGAACTGAAGTCAACGAATCCATTCGTATTTCTGCCCTTCGGATTTGGA
CCACGGATGTGCGTGGGCAAACGCATTGTGGAAATGGAACTGGAATTGGG
TACCGCTCGTCTCATTCGCAATTTCAACGTGGAGTTCAATTATCCCACGG
AGAATGCGTTCCGATCTGCATTGATCAACTTGCCAAACATTCCGCTCAAG
TTTAAATTCATCGATTTACCAAACTAAAAGCTTTCTAGACCAT
BS24346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12a4-RA | 1611 | CG6042-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| Cyp12a5-RA | 1611 | CG11821-PA | 191..1611 | 207..1627 | 2260 | 77.3 | Plus |
| Cyp12c1-RB | 1575 | CG4120-PB | 896..1055 | 942..1101 | 200 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12a4-RA | 1697 | CG6042-RA | 52..1662 | 17..1627 | 8055 | 100 | Plus |
| Cyp12a5-RA | 1820 | CG11821-RA | 228..1648 | 207..1627 | 2260 | 77.3 | Plus |
| Cyp12c1-RB | 1884 | CG4120-RB | 922..1081 | 942..1101 | 200 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19136501..19137101 | 1027..1627 | 3005 | 100 | Plus |
| 3R | 32079331 | 3R | 19135440..19135932 | 87..579 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 19135992..19136440 | 579..1027 | 2245 | 100 | Plus |
| 3R | 32079331 | 3R | 19133488..19133879 | 635..1026 | 595 | 76.8 | Plus |
| 3R | 32079331 | 3R | 19133008..19133374 | 207..573 | 380 | 73.6 | Plus |
| 3R | 32079331 | 3R | 19135209..19135280 | 17..88 | 360 | 100 | Plus |
| 3L | 28110227 | 3L | 18685062..18685221 | 1101..942 | 200 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:03:04 has no hits.
BS24346.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-15 10:19:47 Download gff for
BS24346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12a4-RA | 47..1655 | 17..1625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:14 Download gff for
BS24346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12a4-RA | 52..1660 | 17..1625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:36 Download gff for
BS24346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp12a4-RA | 52..1660 | 17..1625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:36 Download gff for
BS24346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19135209..19135280 | 17..88 | 100 | -> | Plus |
| 3R | 19135442..19135932 | 89..579 | 100 | -> | Plus |
| 3R | 19135993..19136440 | 580..1027 | 100 | -> | Plus |
| 3R | 19136502..19137099 | 1028..1625 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:14 Download gff for
BS24346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14960931..14961002 | 17..88 | 100 | -> | Plus |
| arm_3R | 14961164..14961654 | 89..579 | 100 | -> | Plus |
| arm_3R | 14961715..14962162 | 580..1027 | 100 | -> | Plus |
| arm_3R | 14962224..14962821 | 1028..1625 | 100 | | Plus |
BS24346.pep Sequence
Translation from 16 to 1626
> BS24346.pep
MLKVRSALSLIQSQKATLSLATQKRWQTNVATAEAREDSEWLQAKPFEQI
PRLNMWALSMKMSMPGGKYKNMELMEMFEAMRQDYGDIFFMPGIMGNPPF
LSTHNPQDFEVVFRNEGVWPNRPGNYTLLYHREEYRKDFYQGVMGVIPTQ
GKPWGDFRTVVNPVLMQPKNVRLYYKKMSQVNQEFVQRILELRDPDTLEA
PDDFIDTINRWTLESVSVVALDKQLGLLKNSNKESEALKLFHYLDEFFIV
SIDLEMKPSPWRYIKTPKLKRLMRALDGIQEVTLAYVDEAIERLDKEAKE
GVVRPENEQSVLEKLLKVDRKVATVMAMDMLMAGVDTTSSTFTALLLCLA
KNPEKQARLREEVMKVLPNKNSEFTEASMKNVPYLRACIKESQRLHPLIV
GNARVLARDAVLSGYRVPAGTYVNIVPLNALTRDEYFPQASEFLPERWLR
SPKDSESKCPANELKSTNPFVFLPFGFGPRMCVGKRIVEMELELGTARLI
RNFNVEFNYPTENAFRSALINLPNIPLKFKFIDLPN*
BS24346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp12a4-PA | 536 | CG6042-PA | 1..536 | 1..536 | 2783 | 100 | Plus |
| Cyp12a5-PA | 536 | CG11821-PA | 1..536 | 1..536 | 2181 | 76.1 | Plus |
| Cyp12c1-PB | 524 | CG4120-PB | 32..522 | 38..534 | 1196 | 47.9 | Plus |
| Cyp12c1-PA | 524 | CG4120-PA | 32..522 | 38..534 | 1196 | 47.9 | Plus |
| Cyp12d1-p-PB | 521 | CG30489-PB | 24..519 | 29..534 | 1145 | 42.8 | Plus |
