BS24348.complete Sequence
1109 bp assembled on 2011-02-01
GenBank Submission: KX805024
> BS24348.complete
GAAGTTATCAGTCGACATGGCTGGAAGAGGTGGTTATGAACACGCTAGAA
GCGGATTCGGTGGGGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCG
TTCATCGCATTTGTCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGT
GATCAAAATATTCCAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGG
ACCGGGAAACGGATCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACG
CTGGACAATCTGGAGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGA
CGATCTGTCGGCGCCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATG
ATCGCCCTGGTGGCGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGC
GACGGCGGCAGAGACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGG
CAGCAGTCAGTCCTACAGCCGGGGAGGTCCTGGCACTGGCGGCGGCGGTC
GGGAGGGCGGCGGCGGTTCGGGTAATCGCGGCGATAGTAGAGGTTCGTAC
ATTGATAGTTATGGTGGTCACAATGATAGAAGTCGCGGCGTCGGCGGCAG
CGGCGCGGGCTCCGGCGGTGGCATGAATAGAGGATACAATGATCGGCCGG
CAAATCGTGGTCGGTACGGCAGTTTCAATAACGACGATCGACCATTCGAG
CGTAACCAGGATCGGGATCGCGGTCAGCGGGAAGGCAGCTATGGCAACCA
GTCGCGCGACGGCGATCGCTACAACAACTTCAACCGGCACCGCGACCGCG
AGCGCACCCACTACAATCCCAACCAGCAGAGCGAACGTCCCAGTGGCGGC
ATGACCGGCCTTGGCGGCGGCTCCGGCGGATCAGGAGGCCTAGGCGTTGG
CGGTGGTTCCTCAATGGGCGCCATTGACGACAATGAGCGGCCACGTCTGC
AGCTGAAGCCACGGACCATTGCCGCGCCCATTAACGCGGTGGCAGAGACC
AAGCAATCGGCCTCGATCTTTGGCAACGCCAAGCCGCGCGAAGAGAAGCT
GAAGGAGCTGCAGCAGAATGTCAATCACAACGGCGATAACTAGAAGCTTT
CTAGACCAT
BS24348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-RC | 1077 | CG4429-PC | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| Rbp2-RD | 1167 | CG4429-PD | 1..912 | 17..928 | 4560 | 100 | Plus |
| Rbp2-RA | 978 | CG4429-PA | 1..526 | 17..542 | 2630 | 100 | Plus |
| Rbp2-RD | 1167 | CG4429-PD | 1001..1167 | 927..1093 | 835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-RC | 2640 | CG4429-RC | 32..1111 | 15..1094 | 5400 | 100 | Plus |
| Rbp2-RD | 2730 | CG4429-RD | 32..945 | 15..928 | 4570 | 100 | Plus |
| Rbp2-RA | 3898 | CG4429-RA | 32..559 | 15..542 | 2640 | 100 | Plus |
| Rbp2-RD | 2730 | CG4429-RD | 1034..1201 | 927..1094 | 840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16449872..16450179 | 47..354 | 1540 | 100 | Plus |
| X | 23542271 | X | 16450313..16450600 | 354..641 | 1440 | 100 | Plus |
| X | 23542271 | X | 16451274..16451559 | 641..926 | 1430 | 100 | Plus |
| X | 23542271 | X | 16451918..16452086 | 926..1094 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 30726475..30726649 | 80..254 | 350 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:55:35 has no hits.
BS24348.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:07 Download gff for
BS24348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RC | 22..1098 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:00 Download gff for
BS24348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RC | 34..1110 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:01 Download gff for
BS24348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RC | 34..1110 | 17..1093 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:01 Download gff for
BS24348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16451275..16451559 | 642..926 | 100 | -> | Plus |
| X | 16451919..16452085 | 927..1093 | 100 | | Plus |
| X | 16448698..16448729 | 17..48 | 100 | -> | Plus |
| X | 16449874..16450179 | 49..354 | 100 | -> | Plus |
| X | 16450314..16450600 | 355..641 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:00 Download gff for
BS24348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16343907..16344212 | 49..354 | 100 | -> | Plus |
| arm_X | 16344347..16344633 | 355..641 | 100 | -> | Plus |
| arm_X | 16342731..16342762 | 17..48 | 100 | -> | Plus |
| arm_X | 16345308..16345592 | 642..926 | 100 | -> | Plus |
| arm_X | 16345952..16346118 | 927..1093 | 100 | | Plus |
BS24348.pep Sequence
Translation from 16 to 1092
> BS24348.pep
MAGRGGYEHARSGFGGDRASKQLPTEPPFIAFVGNLPQGLVQGDVIKIFQ
DFEVKYVRLVKDRETDQFKGFCYVEFETLDNLERALECDGRIKLDDLSAP
LRIDIADRRKNDRPGGGVGGGNGGMTRGDGGRDGFQKRGPPRQGGSSQSY
SRGGPGTGGGGREGGGGSGNRGDSRGSYIDSYGGHNDRSRGVGGSGAGSG
GGMNRGYNDRPANRGRYGSFNNDDRPFERNQDRDRGQREGSYGNQSRDGD
RYNNFNRHRDRERTHYNPNQQSERPSGGMTGLGGGSGGSGGLGVGGGSSM
GAIDDNERPRLQLKPRTIAAPINAVAETKQSASIFGNAKPREEKLKELQQ
NVNHNGDN*
BS24348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-PC | 358 | CG4429-PC | 1..358 | 1..358 | 1929 | 100 | Plus |
| Rbp2-PD | 388 | CG4429-PD | 1..388 | 1..358 | 1888 | 92.3 | Plus |
| Rbp2-PA | 325 | CG4429-PA | 1..325 | 1..358 | 1702 | 90.8 | Plus |
| Rbp2-PB | 324 | CG4429-PB | 1..324 | 1..358 | 1685 | 90.5 | Plus |
| Rbp2-PE | 317 | CG4429-PE | 5..317 | 13..358 | 1637 | 90.5 | Plus |
