BS24353.complete Sequence
1100 bp assembled on 2011-02-01
GenBank Submission: KX800726
> BS24353.complete
GAAGTTATCAGTCGACATGGCATTTCTTTGCCCCGTGCGCATGAGGCGCG
ACAAGAAGAAAGCTACAAATGCCAGCATTGAGAGGGACTTACCAGCTGTG
GGTGTATTGGGCATGGGCCGCATAACTGGTTCCTCCAGCATTGAAACACT
TGTAAGAGTGGGCATTGAAAAGGAACACGGTCTAAGTCCTGATTCCAAGA
TGGTTGTGCTGCACGACTTTACTCCTTGCGTGGATGATGAACTAGAGGTG
AAGCGTGGACAGCTGGTTAATATCTTGTACAGAGAGAACGATTGGGTCTA
CGTGATTGGTCAGGACTCTAGGCAGGAGGGTTTCATACCCTTCTCTTATT
GTGCTCCCTGCAACACGCAACTGGCGGATTTGGCTGTTAAGAAGAAACTG
CCAAGGGAACAGTGTCCAGAGCAGCCGATCGAAGAGAATATACCACTTTT
GGGCACGGATAACAAGCTGGATGTTCTTTGCGATGAAACCTTGAATCCTG
GCTCCGCCAACAGCATAGAGAACACCCTGCTGGTGGAGCCAGAGTGTACT
CCTTTCGTGAAGGAACCCTCCGGGCGCTGTATCGTCTTGTACACCTTTAT
AGCCAGGGACGAGAATGATTTGTCTGTGGAACGGGGTGAATTTGTTACCG
TGCTAAATCGCGAGGATCCCGATTGGTTTTGGATAATGCGCAGTGATGGC
CAGGAAGGATTTGTGCCAGCCAGCTTTATTTATCCTGCAGACAGTGTACG
AGTTTTGCAGCAACAGAAAGCCACTTTAAATGCCATGGAGACCATTTTGC
AGCAGGGTCAACAAGGTCAGCAGAGCCAGCAACAGCAGCAGCCTCAATTG
GGCTTGGGAACAGATGATCTACGCTACCATGGCACGGAGCTGGTGATGCT
GTATGATTACAAAGCGCAAGCTCCAGACGATCTGTACCTTTCTGTGCGGA
GAGGAGATTGGATTTACGCAGACTTAACCAATCAGACTGTTGATGGCTGG
CTTTGGGCTTATGCTCCGAAAACCCGCAAATATGGATTCATCCCGAAAGC
CTATGCCCGACCACCCGCGATGACCAGCCTTTAAAAGCTTTCTAGACCAT
BS24353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10933-RA | 1068 | CG10933-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10933-RA | 1402 | CG10933-RA | 132..1199 | 17..1084 | 5340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17723954..17724853 | 185..1084 | 4500 | 100 | Plus |
| 2R | 25286936 | 2R | 17723770..17723895 | 61..186 | 630 | 100 | Plus |
| 2R | 25286936 | 2R | 17723440..17723485 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6822 | 757..846 | 129 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1116 | 799..846 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6859 | 799..847 | 121 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2396 | 799..847 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2381 | 799..847 | 117 | 75 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 145..194 | 793..842 | 115 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9175..9224 | 793..842 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2789..2836 | 799..846 | 114 | 70.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1150 | 800..847 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6768 | 794..846 | 112 | 67.9 | Plus |
BS24353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:11 Download gff for
BS24353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 128..1193 | 17..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:49 Download gff for
BS24353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 132..1197 | 17..1082 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:43 Download gff for
BS24353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10933-RA | 132..1197 | 17..1082 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:43 Download gff for
BS24353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17723440..17723485 | 17..62 | 100 | -> | Plus |
| 2R | 17723772..17723895 | 63..186 | 100 | -> | Plus |
| 2R | 17723956..17724851 | 187..1082 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:49 Download gff for
BS24353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13610945..13610990 | 17..62 | 100 | -> | Plus |
| arm_2R | 13611277..13611400 | 63..186 | 100 | -> | Plus |
| arm_2R | 13611461..13612356 | 187..1082 | 100 | | Plus |
BS24353.pep Sequence
Translation from 16 to 1083
> BS24353.pep
MAFLCPVRMRRDKKKATNASIERDLPAVGVLGMGRITGSSSIETLVRVGI
EKEHGLSPDSKMVVLHDFTPCVDDELEVKRGQLVNILYRENDWVYVIGQD
SRQEGFIPFSYCAPCNTQLADLAVKKKLPREQCPEQPIEENIPLLGTDNK
LDVLCDETLNPGSANSIENTLLVEPECTPFVKEPSGRCIVLYTFIARDEN
DLSVERGEFVTVLNREDPDWFWIMRSDGQEGFVPASFIYPADSVRVLQQQ
KATLNAMETILQQGQQGQQSQQQQQPQLGLGTDDLRYHGTELVMLYDYKA
QAPDDLYLSVRRGDWIYADLTNQTVDGWLWAYAPKTRKYGFIPKAYARPP
AMTSL*
BS24353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10933-PA | 355 | CG10933-PA | 1..355 | 1..355 | 1880 | 100 | Plus |
