BS24357.complete Sequence
1613 bp assembled on 2011-02-02
GenBank Submission: KX805178
> BS24357.complete
GAAGTTATCAGTCGACATGTCTGCTCTACGAATATTGGCCCGATTTGTCA
GCACTAGGACTCTGCGAATTCGTCCGATTCTGGAGATTCCCGCACGCTGC
AAGTACACCCAACATCAAGGAGTTAAGGGCATTCGGAACAGGAAGAGCTT
CTTCGAAGCCCAAATTCAGGCAGGTCAACAAGGTGAGGAGGATGCGGACT
TAGAGCGGACAGCCAATAGCGATCTGGCGGATATGCGGTTCTTGGATGAT
CGAGCCTACGACGAGGTGGCTGGAGGAGCCATGAGAATCACACGTGACAT
AGCCAGCTCTCAGCAGGTGCTCATCCTCCAACCGTATGTAAAATGGGCAG
CCAAACGACAGAACGCACCCGTCGATGTTCGGCCCGAGGATCAACTCGCG
GAGGCCACAGCGCTGATCCACTCCCTGCCCAATTGGCAGGTGGCCAGGGC
ATTAAAGGTTCCCCTCGAAAGCCTCGAAAAGAAGACGCTTTTCGGCAGCG
GCAAGCTGGTGGAACTCAAGGAACTGGTCGCCGAATTGCGGCAGGAACGG
CATCTAACTTGCCTGTTTGTCAGCAAGGGGACACTATCATTCGCCCAAAA
ACGTTTCCTGGAGGCGGAGTTTCGCCTGCCAGTAATGGATCGCTATTCCG
TTGTTATACAGATACTAAGACTGCATGCCACCAGCGCCGAAGCAAAACTG
CAGGTAGCCATGGCTGAACTTCCTTACATTTGGGCGCAGGCTAAGGATGC
CAGTGTTACGCAGACGCGTCGTCAGGGCTACGCCTTGACCGATCTGCAGA
AGGAGATTCTGCGAACCAGGGAGCGAAAGTTGCGAGCGGAATTAGATCGT
GTCCGGCGACAGAGGCAGTTGCTTCGCCAGAAAAGAAAACAGCAAAATTA
TCCCATCGTTGCAGTGGTGGGTTACACAAATGCTGGCAAGACTTCCTTGA
TCAAGGCACTCACAGTCGAGGATGCACTGCAGCCCAGGAATCAGTTGTTC
GCAACGCTTGATGTGACTGCTCATGCTGGTTGTTTGCCATGCAATCTGGA
GGTGATCTATATGGACACGGTGGGCTTTATGTCCGATCTGCCAACGGGAC
TGTTTGAATGCTTTGTGGCCACTTTGGAGGATGCCATGCTGGCGGATGTA
ATAGTCCACGTCCAGGATCTTTCCCATCCGTGTCACGCTGCTCAACGCAG
CCATGTGGAGGCCACGCTTCGTTCTTTGGCATTCAACGTGGCTGGCGGAG
ATTCCACGGCCAGCCAGTTGCCGCCGATCATTAATGTGTACAACAAATGT
GATCTTGTTTCCCAAGAGGCTCAGTCGTCTGCAGACCCAGTGCATCATAT
ATCAGCCAGAGCACAGACTGGGCTGGAACCCCTGCTAGATGACATCGAGC
AACAGATATTGACCGCCACCGGGCGAAGAAAACTTCAGATGCGAGTGCCC
AGCGGCGGTCCAGAAATGGCTTGGCTGTACAAAAACGCAGCTGTGGTGGA
AACGACAGCGGATGCGGAGAATCCCGAACGCCTCATGATGCACGTGGTTA
TCAGCCAACGCACACTGGATCAGTTCAAGCGACAGTTTTGCCGATGAAAG
CTTTCTAGACCAT
BS24357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5116-RB | 1581 | CG5116-PB | 1..1581 | 17..1597 | 7905 | 100 | Plus |
| CG5116-RA | 1581 | CG5116-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42488-RB | 2158 | CG42488-RB | 409..1991 | 16..1598 | 7915 | 100 | Plus |
| CG5116-RB | 2158 | CG5116-RB | 409..1991 | 16..1598 | 7915 | 100 | Plus |
| CG5116-RA | 2380 | CG5116-RA | 257..1839 | 16..1598 | 7915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25484860..25485314 | 1144..1598 | 2275 | 100 | Plus |
| 3R | 32079331 | 3R | 25483851..25484304 | 252..705 | 2270 | 100 | Plus |
| 3R | 32079331 | 3R | 25484359..25484802 | 702..1145 | 2220 | 100 | Plus |
| 3R | 32079331 | 3R | 25483561..25483797 | 16..252 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:54:53 has no hits.
BS24357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:14 Download gff for
BS24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5116-RA | 255..1834 | 17..1596 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:22 Download gff for
BS24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5116-RA | 258..1837 | 17..1596 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:24 Download gff for
BS24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5116-RA | 258..1837 | 17..1596 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:24 Download gff for
BS24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25483562..25483797 | 17..252 | 100 | -> | Plus |
| 3R | 25483852..25484302 | 253..703 | 100 | -> | Plus |
| 3R | 25484361..25484801 | 704..1144 | 100 | -> | Plus |
| 3R | 25484861..25485312 | 1145..1596 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:22 Download gff for
BS24357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21309284..21309519 | 17..252 | 100 | -> | Plus |
| arm_3R | 21309574..21310024 | 253..703 | 100 | -> | Plus |
| arm_3R | 21310083..21310523 | 704..1144 | 100 | -> | Plus |
| arm_3R | 21310583..21311034 | 1145..1596 | 100 | | Plus |
BS24357.pep Sequence
Translation from 16 to 1596
> BS24357.pep
MSALRILARFVSTRTLRIRPILEIPARCKYTQHQGVKGIRNRKSFFEAQI
QAGQQGEEDADLERTANSDLADMRFLDDRAYDEVAGGAMRITRDIASSQQ
VLILQPYVKWAAKRQNAPVDVRPEDQLAEATALIHSLPNWQVARALKVPL
ESLEKKTLFGSGKLVELKELVAELRQERHLTCLFVSKGTLSFAQKRFLEA
EFRLPVMDRYSVVIQILRLHATSAEAKLQVAMAELPYIWAQAKDASVTQT
RRQGYALTDLQKEILRTRERKLRAELDRVRRQRQLLRQKRKQQNYPIVAV
VGYTNAGKTSLIKALTVEDALQPRNQLFATLDVTAHAGCLPCNLEVIYMD
TVGFMSDLPTGLFECFVATLEDAMLADVIVHVQDLSHPCHAAQRSHVEAT
LRSLAFNVAGGDSTASQLPPIINVYNKCDLVSQEAQSSADPVHHISARAQ
TGLEPLLDDIEQQILTATGRRKLQMRVPSGGPEMAWLYKNAAVVETTADA
ENPERLMMHVVISQRTLDQFKRQFCR*
BS24357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5116-PB | 526 | CG5116-PB | 1..526 | 1..526 | 2655 | 100 | Plus |
| CG5116-PA | 526 | CG5116-PA | 1..526 | 1..526 | 2655 | 100 | Plus |
