BS24359.complete Sequence
1346 bp assembled on 2011-02-01
GenBank Submission: KX802611
> BS24359.complete
GAAGTTATCAGTCGACATGCAGGTCCCGCTCAGCGATGTTCAGGTCCTGC
AGGATCCCACCGACGCGGAAACCCTTGTCGGCGGCGACAAGGAGGAGACC
TTTGCCCACATGAAGGAGTGGAAGCGCCAGTACATGCGGGGCATCTCGCA
CACGCCATCGCAGGCGGGAGTCTACTACGAGGCCTTGAAGGGTTCCAGCC
ACTCGCTGGCCAAAGGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGT
GTTCGCCGACGAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAA
GCACCTGCAAAGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCA
TGGTGGATTGGCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTT
ATCCTGTCTTGGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACAC
ACACGGAGACTTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTG
GTTGGGCGCCTTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTG
TTCTCCATTGAAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTC
GCCCGAGTGTCCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATG
GCGTGATGTCTTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACA
AGGGCCAAACAGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAAT
TTGCCAACGTGATGGCACCCTTTCGCTGATGTTCCGTGTGGGTGACATGC
GAAAATCACACATCATTGGAGCCGGAGTGAGGGCTCAGTTGATCAGGACA
AAGAGCACCAAGGAGGGTGAGGTGATGACACAGTACTTCACAGAACTGGA
GATCGGTACTGATGACTCCGGCTCTGATTTGTTCTTCATCTGGCCCATGG
TCATCGAGCACAAGATCGACGAGAACTCACCGCTCTATAATCTTAATGCC
ACTGATATGCTGCAGGATAAGTTCGAAATCGTGGTGATCCTAGAGGGCAC
CGTGGAGTCCACTGGACAGAGCACTCAAGCCAGATCCAGCTATATTAACA
CTGAGATCCTTTGGGGACATCGTTTCGATCCAGTGGTGTTGTACAACAAG
GATCTGCAGGCCTATGAAATCGACTACGCTCGCTTTAACGAAACCACTCA
GGTGGACACTCCGTTGTGCAGTGCTCGGGAATTGAACGAGATCTACAAGA
TCCAGGAGGGATTCCGCACACCAGAAACCACCTTTACCATGCGTCAACTG
TCCCACAATCATTCTGACCAGGCCTCCTAGAAGCTTTCTAGACCAT
BS24359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RB | 1314 | CG4370-PB | 1..1314 | 17..1330 | 6570 | 100 | Plus |
| Irk2-RC | 1356 | CG4370-PC | 1..1258 | 17..1274 | 6290 | 100 | Plus |
| Irk2-RA | 1362 | CG4370-PA | 248..1362 | 216..1330 | 5575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RB | 1600 | CG4370-RB | 50..1363 | 17..1330 | 6570 | 100 | Plus |
| Irk2-RC | 1485 | CG4370-RC | 50..1307 | 17..1274 | 6290 | 100 | Plus |
| Irk2-RA | 1894 | CG4370-RA | 543..1657 | 216..1330 | 5575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514377..23515161 | 1274..490 | 3925 | 100 | Minus |
| 3R | 32079331 | 3R | 23515213..23515488 | 491..216 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 23518070..23518269 | 216..17 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 23514268..23514326 | 1330..1272 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:56:17 has no hits.
BS24359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:09 Download gff for
BS24359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 45..1358 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:24 Download gff for
BS24359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 50..1363 | 17..1330 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:19 Download gff for
BS24359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RB | 50..1363 | 17..1330 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:19 Download gff for
BS24359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23518070..23518269 | 17..216 | 100 | | Minus |
| 3R | 23514268..23514323 | 1275..1330 | 100 | <- | Minus |
| 3R | 23514377..23515159 | 492..1274 | 100 | <- | Minus |
| 3R | 23515213..23515487 | 217..491 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:24 Download gff for
BS24359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19339990..19340045 | 1275..1330 | 100 | <- | Minus |
| arm_3R | 19340099..19340881 | 492..1274 | 100 | <- | Minus |
| arm_3R | 19340935..19341209 | 217..491 | 100 | <- | Minus |
| arm_3R | 19343792..19343991 | 17..216 | 100 | | Minus |
BS24359.pep Sequence
Translation from 16 to 1329
> BS24359.pep
MQVPLSDVQVLQDPTDAETLVGGDKEETFAHMKEWKRQYMRGISHTPSQA
GVYYEALKGSSHSLAKGSRNFRPGSMRRVRRRAVFKNGDCNVVQKHLQRR
RVRFLQDMYTTMVDWQWRWTLLAFALSFILSWLFFALIWWLIIYTHGDLE
EPHLPENQEESGWAPCVSAIDGFTSCFLFSIETQHTIGYGVRTTSPECPE
AIFMMCFQSIYGVMSSAFMAGIVFAKMTRAKQRAQTLLFSKHAVICQRDG
TLSLMFRVGDMRKSHIIGAGVRAQLIRTKSTKEGEVMTQYFTELEIGTDD
SGSDLFFIWPMVIEHKIDENSPLYNLNATDMLQDKFEIVVILEGTVESTG
QSTQARSSYINTEILWGHRFDPVVLYNKDLQAYEIDYARFNETTQVDTPL
CSARELNEIYKIQEGFRTPETTFTMRQLSHNHSDQAS*
BS24359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-PB | 437 | CG4370-PB | 1..437 | 1..437 | 2308 | 100 | Plus |
| Irk2-PC | 451 | CG4370-PC | 1..429 | 1..429 | 2219 | 98.1 | Plus |
| Irk2-PA | 453 | CG4370-PA | 84..453 | 68..437 | 1957 | 100 | Plus |
| Irk2-PD | 454 | CG4370-PD | 84..454 | 68..437 | 1945 | 99.7 | Plus |
| Irk1-PB | 555 | CG44159-PB | 14..377 | 52..409 | 1069 | 57.4 | Plus |
