BS24366.complete Sequence
1853 bp assembled on 2011-02-17
GenBank Submission: KX802397
> BS24366.complete
GAAGTTATCAGTCGACATGAAGTCGACGCGGACTGCACTTGGAGTGGCCC
TGCTCCTGGCCCTGGTGTCTCAACTGGCGGCCCACAGCTCGGATGACTTG
GTTTACGGCTACGAGTGCCGCAGTGGCTACTGCCAGAAGGTAGAGCTCAG
CGAGGAGAACTACGTCAAGGCCATCAGTCTGCCCGTGTGCCGGCTCTTCT
GCGGCAGCTCCATCGGCACCTTGTGGCCCAAACCGACGGGCACTGTGCGT
CTGGACACGTTGATGCGCCAAGTGGACATCTCCTTCATTGATTTCAATTT
CAATGGAATTGCCCGCCAGCAGAAGCTATGGCGAGCGGTTGAAGACCGTT
TCATGAACATGCTCGAAGCCCAGATTCCGGATCGCAAGGTTCTGGCACGA
GGTGGCTACCGTATGTCTGTGAACATCAATACTCCTGATGAGCCGACACC
GGCCAGACTCACCCTGGATACGGATGAGAGCTATACGCTGGACATTGATA
CGGATGCCTCGGGTCATGTGCTGGCCAACATAACCGCGTCCAACTTCTTT
GGAGCCCGTCATGGCCTGGAGACACTAGCCCAGTTGATTGTCTACGATGA
CATCCGCCGCGAGGTTCAGGTGACTGCCAATGCCACCATCAACGATGCTC
CCGTGTACAAATGGCGTGGATTGCTCCTGGACACCTCCCGTAACTACTAC
TCTGTGAAGTCCATCAAGAGGACGTTGGAGGGCATGGCCTTGGTCAAACT
GAACACCTTCCACTGGCACATCACGGACTCGCACAGCTTCCCATTGGAGG
TGAAGAAGCGTCCGGAGCTGCACAAGCTGGGAGCCTATTCCCAACGGCAG
GTGTACACCCGTCGGGACGTGGCCGAGGTTGTGGAGTACGGCCGCGTGCG
AGGCATCCGTGTTATGCCAGAGTTCGATGCCCCTGCCCATGTGGGTGAGG
GCTGGCAGCACAAGAACATGACCGCCTGCTTCAATGCCCAGCCATGGAAG
TCGTTCTGCGTTGAGCCACCGTGTGGCCAACTCGATCCCACTGTGAACGA
AATGTACGATGTGCTGGAGGACATTTACGGCACCATGTTCGATCAGTTCA
ACCCGGATATCTTCCACATGGGCGGCGATGAAGTGTCAACCAGCTGCTGG
AACAGCAGCCAGCCCATCCAGCAGTGGATGAAGAAACAGGGTTGGGGCCT
GGAGACCGCCGACTTTATGCGCTTGTGGGGACACTTCCAGACGGAGGCTC
TTGGTCGCGTGGACAAGGTGGCCAATGGTACGCACACGCCCATCATTCTG
TGGACTAGTGGACTCACTGAGGAGCCCTTCATTGACGAGTATCTGAACCC
AGAGCGTTACATCATTCAGATCTGGACCACTGGTGTAGATCCGAAGGTAA
AGAAGATTCTGGAGCGGGGCTACAAGATCATTGTGTCCAACTACGATGCC
CTGTACTTGGATTGCGGCGGAGCTGGCTGGGTGACCGATGGAAACAACTG
GTGCTCCCCCTACATTGGCTGGCAGAAGGTGTACGACAATAGTTTGAAAT
CCATTGCCGGCGACTACGAGCATCATGTATTGGGCGCGGAGGGAGCCATT
TGGTCAGAGCAGATCGACGAGCACACACTGGACAACCGCTTCTGGCCCAG
GGCCAGTGCCCTGGCCGAACGACTTTGGTCAAATCCTGCCGAAGGTTGGC
GCCAGGCGGAGTCACGTCTGCTGCTCCACCGCCAGCGACTGGTGGACAAT
GGTCTGGGCGCAGAGGCCATGCAGCCGCAGTGGTGCCTGCAAAACGAGCA
CGAGTGTCCCATTGACGCGTACGATGCACAAGTTTGAAAGCTTTCTAGAC
CAT
BS24366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexo1-RF | 1821 | CG1318-PF | 1..1821 | 17..1837 | 9090 | 99.9 | Plus |
| Hexo1-RE | 1821 | CG1318-PE | 1..1821 | 17..1837 | 9090 | 99.9 | Plus |
| Hexo1-RD | 1821 | CG1318-PD | 1..1821 | 17..1837 | 9090 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexo1-RF | 2113 | CG1318-RF | 147..1971 | 13..1837 | 9095 | 99.9 | Plus |
| Hexo1-RE | 2069 | CG1318-RE | 103..1927 | 13..1837 | 9095 | 99.9 | Plus |
| Hexo1-RD | 2211 | CG1318-RD | 245..2069 | 13..1837 | 9095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4289960..4291069 | 728..1837 | 5550 | 100 | Plus |
| 3L | 28110227 | 3L | 4289246..4289880 | 94..728 | 3160 | 99.8 | Plus |
| 3L | 28110227 | 3L | 4289091..4289171 | 13..93 | 390 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12489611..12489708 | 774..677 | 220 | 81.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:05:20 has no hits.
BS24366.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 13:05:08 Download gff for
BS24366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RE | 106..1925 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:34 Download gff for
BS24366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 249..2068 | 17..1836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:32 Download gff for
BS24366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexo1-RD | 249..2068 | 17..1836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:32 Download gff for
BS24366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4289095..4289171 | 17..93 | 100 | -> | Plus |
| 3L | 4289246..4289880 | 94..728 | 99 | -> | Plus |
| 3L | 4289961..4291068 | 729..1836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:34 Download gff for
BS24366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4289095..4289171 | 17..93 | 100 | -> | Plus |
| arm_3L | 4289246..4289880 | 94..728 | 99 | -> | Plus |
| arm_3L | 4289961..4291068 | 729..1836 | 100 | | Plus |
BS24366.pep Sequence
Translation from 16 to 1836
> BS24366.pep
MKSTRTALGVALLLALVSQLAAHSSDDLVYGYECRSGYCQKVELSEENYV
KAISLPVCRLFCGSSIGTLWPKPTGTVRLDTLMRQVDISFIDFNFNGIAR
QQKLWRAVEDRFMNMLEAQIPDRKVLARGGYRMSVNINTPDEPTPARLTL
DTDESYTLDIDTDASGHVLANITASNFFGARHGLETLAQLIVYDDIRREV
QVTANATINDAPVYKWRGLLLDTSRNYYSVKSIKRTLEGMALVKLNTFHW
HITDSHSFPLEVKKRPELHKLGAYSQRQVYTRRDVAEVVEYGRVRGIRVM
PEFDAPAHVGEGWQHKNMTACFNAQPWKSFCVEPPCGQLDPTVNEMYDVL
EDIYGTMFDQFNPDIFHMGGDEVSTSCWNSSQPIQQWMKKQGWGLETADF
MRLWGHFQTEALGRVDKVANGTHTPIILWTSGLTEEPFIDEYLNPERYII
QIWTTGVDPKVKKILERGYKIIVSNYDALYLDCGGAGWVTDGNNWCSPYI
GWQKVYDNSLKSIAGDYEHHVLGAEGAIWSEQIDEHTLDNRFWPRASALA
ERLWSNPAEGWRQAESRLLLHRQRLVDNGLGAEAMQPQWCLQNEHECPID
AYDAQV*
BS24366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexo1-PF | 606 | CG1318-PF | 1..606 | 1..606 | 3276 | 100 | Plus |
| Hexo1-PE | 606 | CG1318-PE | 1..606 | 1..606 | 3276 | 100 | Plus |
| Hexo1-PD | 606 | CG1318-PD | 1..606 | 1..606 | 3276 | 100 | Plus |
| Hexo1-PA | 622 | CG1318-PA | 1..601 | 1..601 | 3250 | 100 | Plus |
| Hexo2-PA | 622 | CG1787-PA | 14..621 | 6..597 | 972 | 35.7 | Plus |
