BS24368.complete Sequence
2324 bp assembled on 2011-02-17
GenBank Submission: KX801951
> BS24368.complete
GAAGTTATCAGTCGACATGGCGCATTTTCGTAATGGCCAGGAAATACCCA
TGATATTGGTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTG
ATTGACGACACCCGTGCCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTC
CTACTACGAGACCTGCGCCACCTACGGCCTGAATGTGGAGCGTGTCTTTC
AGGATGCCTGTCAAAAGATCCTCTCGCAGCGCCTGCCTTTGCCACCACAG
GTGCAACCGGCGAGACCCACGACTCCGCAGGGCAATCGCCTGGGATTGGC
TCCCTACCAGGCGCCCACCAATGGACAACGTGGCCAGCAGCAGCTACCAC
TGCGAATGAGTGCGGATTTCGCACAGGCGGAGCAGAAACTTTGGTCGCTG
CAAGCGGCCAGCAGTTCCACCATAAACGAGAATAACAACATCACCAAATA
CAATCCCGGAGCGGCCAATTCGCTGCAGGGTGATTGCTCCCAGGTGCAGT
TGCGCGATCCACGTGATCTGGCGCCACCACCGGGTAAGGAGCTGCCCACA
CCCACCTCGACGCCCACGACGAGCCGCAAGAGCCGGCGGCGTTCGAACCT
CTTCATCCCCTCCTCTTCGAAGAAGGCCGACAAGGAGAAGGAGCCAAAGA
GCAGTGAACTGGGCAGTGGACGTTCCATACCCATTAAACAGGGCTACCTG
TACAAACGCTCTAGCAAATCCTTGAACAAGGAGTGGAAGAAGAAGTATGT
GACCCTGTGCGACGACGGCAGGCTTACCTATCATCCCTCTTTGCACGACT
ATATGGACGATGTGCACGGCAAGGAGATTCCGCTGCAGTACGTCACCGTA
AAGGTGCCGGGACAGAAACCTCGTGGCTCCAAGAGCATAATCACGAACAG
TGCGCTCACCAGTTCACTGATGGCCAATGGCCAAAGAGCTCAGAACACTC
TGAGCGATGGCATCGGTTGTCTCACCCTGGCCAAGGACAATCAGCGCAAG
CTGAGCGAGAAATTATCCCTACTCGGAGCCGGATCCATTGCAGCTGGTGC
CGGTGGAGAGCCTTTGAAGTCGAATAGCTCACAGCAGACGAGCGGTGACG
AGGGCATAGCCATGTCCAATTCAAATTCACAGACTTTTATCGCCGGAGAA
GTGGCCAATGCGGGAAATAAGCTGGAGGCCCAGACGCCGAACGTGAAGAA
GCGACATCGCCGCATGAAGAGCAGCAGTGTCAAGGCGAACGAGGCGGACG
ACAACGATGGCTATGAATTCTACATCGTATCGCTGGACTCCAAGCAGTGG
CACTTTGAGGCTGCCAATTCCGAGGAGCGCGACGAGTGGGTAGCGGCCGT
CGAGCAGGAGATCTTCAAGAGCCTGCAGAGCATCGAGAGCAGCAAGACCA
AACAGGCCACCAGCACTGATCTCGCTGCCATGCTGGCCATCCGTCAGCGG
GTTCCTGGCAACGGCTTCTGCGTCGACTGTGGAGCGCCAAATCCTGAATG
GGCTAGCTTAAACTTGGGCGTACTCATGTGCATCGAGTGCTCGGGCGTGC
ATCGCAATCTTGGCTCGCACATATCCAAGGTTCGCTCTCTGGGCCTGGAT
GACTGGCCATCCCCGCATCTCAGTGTGATGCTGGCCATTGGCAACAGTCT
GGCCAACTCGGTTTGGGAGTCGAACACGCGGCAGCGGGTCAAGCCCACTT
CGCAGGCCAGTCGCGAGGACAAAGAGCGATGGGTGCGCAGCAAGTACGAG
GCCAAGGAGTTCCTGACGCCACTGGGCAACGGATCCTCAGCGCATCCAAG
CCCAAGTCCGGGTCAGCAGTTGATCGAGGCTGTGATCAGGGCGGACATCA
AGTCGATCGTTTCGATCTTGGCCAATTGTCCGTCCGAGGTGACCAATGCG
AATGTCAGCGCAAGAGATGTGCGAACTCCGCTGCTGCTTGCCTGTGCCAT
AGGCAATCTGGCCATAGCACAGCTGCTCATATGGAATGGCGCAAACATTA
AGCACACGGATCATGAGGGTCGCACCTGCCTGGCCTACGCTCGAGCGGCA
CAATCCCTGGCCACCGCCAAGTCGATCAAAGCCGCTGCAGCTGCGCAGGC
GGGCACAACGATTCCGGCTCCTGCTCCGCCCACAAACGGTGGCATTCCTG
CTCCCCAATACAATGTCGAGGACACGACGGCGCTGGTGGAGCTGCTCGAG
GGACTGGGCTGTCCAGAGGCGGCTCCTCTGACGGCCAGTGGCACTTTGCC
TAGGAGACGTGACACGTTAGGCACTCCGTACGAGAAGTCGGTGTCGGGTG
TGATCTGAAAGCTTTCTAGACCAT
BS24368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-RC | 2292 | CG31811-PC | 1..2292 | 17..2308 | 11460 | 100 | Plus |
| CenG1A-RA | 2784 | CG31811-PA | 493..2784 | 17..2308 | 11460 | 100 | Plus |
| CenG1A-RB | 2988 | CG31811-PB | 697..2988 | 17..2308 | 11460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-RC | 3516 | CG31811-RC | 262..2554 | 17..2309 | 11465 | 100 | Plus |
| CenG1A-RA | 3869 | CG31811-RA | 1071..3363 | 17..2309 | 11465 | 100 | Plus |
| CenG1A-RB | 4444 | CG31811-RB | 1190..3482 | 17..2309 | 11465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13895456..13896740 | 206..1490 | 6425 | 100 | Plus |
| 2L | 23513712 | 2L | 13896986..13897361 | 1609..1984 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 13897425..13897750 | 1984..2309 | 1630 | 100 | Plus |
| 2L | 23513712 | 2L | 13895253..13895389 | 70..206 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 13896801..13896922 | 1487..1608 | 595 | 99.2 | Plus |
| 2L | 23513712 | 2L | 13895116..13895170 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:47:22 has no hits.
BS24368.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:05:23 Download gff for
BS24368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenG1A-RC | 240..2530 | 17..2307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:17 Download gff for
BS24368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 1190..3480 | 17..2307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:24 Download gff for
BS24368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RB | 1190..3480 | 17..2307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:24 Download gff for
BS24368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13895116..13895170 | 17..71 | 100 | -> | Plus |
| 2L | 13895255..13895389 | 72..206 | 100 | -> | Plus |
| 2L | 13895457..13896740 | 207..1490 | 100 | -> | Plus |
| 2L | 13896805..13896922 | 1491..1608 | 100 | -> | Plus |
| 2L | 13896986..13897361 | 1609..1984 | 100 | -> | Plus |
| 2L | 13897426..13897748 | 1985..2307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:17 Download gff for
BS24368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13895116..13895170 | 17..71 | 100 | -> | Plus |
| arm_2L | 13895255..13895389 | 72..206 | 100 | -> | Plus |
| arm_2L | 13895457..13896740 | 207..1490 | 100 | -> | Plus |
| arm_2L | 13896805..13896922 | 1491..1608 | 100 | -> | Plus |
| arm_2L | 13896986..13897361 | 1609..1984 | 100 | -> | Plus |
| arm_2L | 13897426..13897748 | 1985..2307 | 100 | | Plus |
BS24368.pep Sequence
Translation from 16 to 2307
> BS24368.pep
MAHFRNGQEIPMILVGTQDAISERNPRVIDDTRARKLASDLKRCSYYETC
ATYGLNVERVFQDACQKILSQRLPLPPQVQPARPTTPQGNRLGLAPYQAP
TNGQRGQQQLPLRMSADFAQAEQKLWSLQAASSSTINENNNITKYNPGAA
NSLQGDCSQVQLRDPRDLAPPPGKELPTPTSTPTTSRKSRRRSNLFIPSS
SKKADKEKEPKSSELGSGRSIPIKQGYLYKRSSKSLNKEWKKKYVTLCDD
GRLTYHPSLHDYMDDVHGKEIPLQYVTVKVPGQKPRGSKSIITNSALTSS
LMANGQRAQNTLSDGIGCLTLAKDNQRKLSEKLSLLGAGSIAAGAGGEPL
KSNSSQQTSGDEGIAMSNSNSQTFIAGEVANAGNKLEAQTPNVKKRHRRM
KSSSVKANEADDNDGYEFYIVSLDSKQWHFEAANSEERDEWVAAVEQEIF
KSLQSIESSKTKQATSTDLAAMLAIRQRVPGNGFCVDCGAPNPEWASLNL
GVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAIGNSLANSVW
ESNTRQRVKPTSQASREDKERWVRSKYEAKEFLTPLGNGSSAHPSPSPGQ
QLIEAVIRADIKSIVSILANCPSEVTNANVSARDVRTPLLLACAIGNLAI
AQLLIWNGANIKHTDHEGRTCLAYARAAQSLATAKSIKAAAAAQAGTTIP
APAPPTNGGIPAPQYNVEDTTALVELLEGLGCPEAAPLTASGTLPRRRDT
LGTPYEKSVSGVI*
BS24368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-PC | 763 | CG31811-PC | 1..763 | 1..763 | 3936 | 100 | Plus |
| CenG1A-PA | 927 | CG31811-PA | 165..927 | 1..763 | 3936 | 100 | Plus |
| CenG1A-PB | 995 | CG31811-PB | 233..995 | 1..763 | 3936 | 100 | Plus |
| CenB1A-PB | 598 | CG6742-PB | 84..267 | 408..583 | 312 | 35.3 | Plus |
| CenB1A-PA | 828 | CG6742-PA | 314..497 | 408..583 | 312 | 35.3 | Plus |
