BS24384.complete Sequence
500 bp assembled on 2011-02-01
GenBank Submission: KX802626
> BS24384.complete
GAAGTTATCAGTCGACATGGCTGATCAGAACGAGCGCGCCTTCCAAAAAC
AATTCGGTGTCAACCTAAACCGCAAGGTCAAGCCCGGTATCACCAAGAAG
AAGCTGCTGCGTCGCTCCCGCGATGTGGGACTCGGTTTCAAGACCCCACG
TGAGGCCATCGATGGTACCTACATCGACAAGAAGTGCCCCTGGACCGGTG
ATGTGAGGATCCGTGGTCGCATTCTGACCGGCGTGGTCCGCAAGGCCAAG
ATGCAGCGCACCATTGTCATTCGGCGCGACTACCTGCACTTTGTGCGCAA
ATACAGCCGTTTCGAGAAGCGTCACCGCAACATGAGCGTCCACTGCTCCC
CTGTGTTCAGAGATGTTGAGCATGGCGATATTGTCACCATTGGTGAGTGC
CGTCCTCTGTCCAAGACTGTGCGCTTCAACGTCCTGAAAGTCAGCAAGGG
TCAGGGAGCCAAGAAGAGCTTCAAGAAGTACTAGAAGCTTTCTAGACCAT
BS24384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-RC | 468 | CG8857-PC | 1..468 | 17..484 | 2340 | 100 | Plus |
| RpS11-RB | 465 | CG8857-PB | 133..465 | 152..484 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-RC | 738 | CG8857-RC | 28..498 | 15..485 | 2355 | 100 | Plus |
| RpS11-RB | 569 | CG8857-RB | 162..495 | 152..485 | 1670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12199834..12200041 | 360..153 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 12200115..12200244 | 155..26 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 12199465..12199592 | 485..358 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:53:14 has no hits.
BS24384.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:02 Download gff for
BS24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RC | 43..510 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:53 Download gff for
BS24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RC | 30..497 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:05 Download gff for
BS24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS11-RC | 30..497 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:05 Download gff for
BS24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12199466..12199589 | 361..484 | 100 | <- | Minus |
| 2R | 12199834..12200039 | 155..360 | 100 | <- | Minus |
| 2R | 12200116..12200249 | 21..154 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:53 Download gff for
BS24384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8086971..8087094 | 361..484 | 100 | <- | Minus |
| arm_2R | 8087339..8087544 | 155..360 | 100 | <- | Minus |
| arm_2R | 8087621..8087754 | 21..154 | 98 | | Minus |
BS24384.pep Sequence
Translation from 16 to 483
> BS24384.pep
MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDG
TYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFE
KRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSKGQGAKK
SFKKY*
BS24384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS11-PC | 155 | CG8857-PC | 1..155 | 1..155 | 812 | 100 | Plus |
| RpS11-PB | 154 | CG8857-PB | 1..154 | 1..155 | 660 | 83.3 | Plus |
