BS24390.complete Sequence
456 bp assembled on 2011-02-01
GenBank Submission: KX805033
> BS24390.complete
GAAGTTATCAGTCGACATGTTCCGCTACCTGCTCGTCGCCTCCGCTATCC
TGGCCTGCGCCTACGGTGCCGCCACCTACAACCAGGAAGCTGGTGCCTAC
ATCACAAAGATCGGTTCCGACATCCAGCCCGAGGGCAACTACAACTACCA
ATACGAGACCAGCAACGGCATCGCCGCCCAGGAGTCCGGAATTGGAGGAA
ACCACGCCAACGGAGGCTTCTCGTGGTACTCGCCCGAGGGTGAGCTCGTC
CAGATCTCGTACGTGGCCGACGAGAACGGTTACCAGCCCCAGGGAGCTCT
CCTGCCCACTCCTCCTCCAATCCCAGCTGCCATCCTTAGGAGCTTGGAGT
ACATCCGCACCCATCCCCAATACGTCGAGCAGGAGTACCGCAGGCCCGCC
CTCAGGAAGGTCTTTGGTTAAAAGCTTTCTAGTCCATTCGTTGGGCCCTT
AAACGA
BS24390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-RA | 405 | CG7941-PA | 1..405 | 17..421 | 2010 | 99.8 | Plus |
| Cpr67Fa2-RA | 405 | CG18349-PA | 1..405 | 17..421 | 1800 | 96.3 | Plus |
| Lcp4-RB | 339 | CG2044-PB | 225..296 | 265..336 | 255 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-RA | 554 | CG7941-RA | 60..464 | 17..421 | 2010 | 99.8 | Plus |
| Cpr67Fa2-RA | 565 | CG18349-RA | 45..459 | 7..421 | 1805 | 95.7 | Plus |
| Lcp4-RB | 527 | CG2044-RB | 274..345 | 265..336 | 255 | 90.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10890218..10890610 | 29..421 | 1950 | 99.7 | Plus |
| 3L | 28110227 | 3L | 10892019..10892410 | 30..421 | 1750 | 96.4 | Plus |
| 2R | 25286936 | 2R | 8437977..8438048 | 265..336 | 255 | 90.3 | Plus |
| 2R | 25286936 | 2R | 8435769..8435840 | 265..336 | 240 | 88.9 | Plus |
| 3L | 28110227 | 3L | 7093638..7093705 | 302..369 | 205 | 86.8 | Plus |
| 2R | 25286936 | 2R | 8430808..8430913 | 334..229 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:18:20 has no hits.
BS24390.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:48 Download gff for
BS24390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 58..459 | 22..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:13 Download gff for
BS24390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 65..466 | 22..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:34 Download gff for
BS24390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr67Fa1-RA | 65..466 | 22..425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:34 Download gff for
BS24390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10890215..10890612 | 26..425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:13 Download gff for
BS24390.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10883315..10883712 | 26..425 | 99 | | Plus |
BS24390.pep Sequence
Translation from 16 to 420
> BS24390.pep
MFRYLLVASAILACAYGAATYNQEAGAYITKIGSDIQPEGNYNYQYETSN
GIAAQESGIGGNHANGGFSWYSPEGELVQISYVADENGYQPQGALLPTPP
PIPAAILRSLEYIRTHPQYVEQEYRRPALRKVFG*
BS24390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr67Fa1-PA | 134 | CG7941-PA | 1..134 | 1..134 | 710 | 100 | Plus |
| Cpr67Fa2-PA | 134 | CG18349-PA | 1..134 | 1..134 | 704 | 97.8 | Plus |
| Cpr65Ec-PA | 127 | CG8634-PA | 4..117 | 2..118 | 335 | 53.8 | Plus |
| Cpr65Eb-PA | 179 | CG8638-PA | 8..122 | 5..118 | 312 | 52.2 | Plus |
| Cpr67Fb-PA | 122 | CG18348-PA | 1..114 | 1..117 | 296 | 50.4 | Plus |
