BS24407.complete Sequence
1532 bp assembled on 2011-02-03
GenBank Submission: KX805152
> BS24407.complete
GAAGTTATCAGTCGACATGTACTCTGACAATGATGACACCCACAAAAACT
CGAATGGATCGCATCGCATACGGAACGTGCTGACTTTGGAGGAGCGTGTG
GCTGCCATCCGACAGTACGACATTGTGCCCATGTACAGTAAGATTGCGAG
GAACTTTAATTGCAGCTGGGAGCAAATCAAGAGCATAGTCTCCAATCGGG
AAGCCATCCTGGAGTTCCACAAGGCCACCAATCGGCTCAGCCAGCCGGCC
AATAAGGATGCCGAGCTGCGCCGGCGCAAGCTGAACTTTCTGGGCCACTG
CCTGTACGAGTACATCCAGAGGGCCCAGTTTTACCTCCACAGCGATGTGA
ACGAGGAGATGATCCGCAACCGTGCGATCGAGTTCCGGGATCTCATGCAA
CTCGATGGTTTTGTGCCGAACAAACCGTGGATCAATCACTTCAAGGCCGC
CTATAATATAACACTGTCGAATCGTCAGATCACGATAGTCCGCCGACCAC
CACGATCTATGGACTTGAGGGACATTATGTCGTACTGTGGACGACACACC
TCGATGTCTTGTAGCTTAGCGCCTAGATCGCCGGAACCTGCGCTCACTAG
CAGTGATCGACCTCTTTATCGTACAAAGACATTGGTCACCACCTCTAGCC
AAAATCAAGCCACCTCGGATGAAGTGCACCTGCGTAGAAAGCGAAAGTTA
GCGTTCCTGGAGAAATGCGTTTATGAGTACATCCAGCGATCACAGTTGGT
TCGCCAGGGTCGTCTTGACCTAGACAATTTGCGCTTTGTGGCCATTAGTT
TAAGGGACATCCTCAAAATCGACTCCTTCTTTCCCGACAAAGTGTGGTTG
AAGCACTTTAAGAGTCGCTATAACTTTAATTTCACGGTGGGAGTTCAGGT
GACGAACCGCCGCTTGCCGCTTTCCCTGGACCTAAGAGATATAGTTAGTT
ATTGCGGCCGGAATGAACATAAGATCACGCTGGACCACAAGAAGTCGCAG
GAAGAACTGAGCCAGAGCGACAAGCCAGAGGTGGACCAATGCCCACAGGT
GGAACCAAAACCCGAAGAATTTGAGCACGAAGAAGACGATGATTGCGTGG
CCATTGAAGTGCCACCTGAGCTCATAGAAATAAAGGATGATGAGGATAAT
GACGATGAGCATAATGATAATGAGGATTTGCCAGAAAGGGCTACTAAACG
AAAATCAGACGAGAACGGCGGCCCAATACCATGTGGCTTGAAGATTCAGA
AGATTCAATCGCTCAATGAGTCATTGCCTGAGGATACGGAACTACTTCCA
GCCAATAGTCCCGGTCATTATTCAGAGACCAGCGATGAGGCACATCTGCC
GCGCTGCGTAGAAAGCTACAAGGACGCACTGCGTCTACTGAAGCCCCTGG
AGGAATTCGTCCTAATGGAGGAGAACTATCGAGCCATTGGCCTGCTCACG
CAGCTGGAGAAGATCTTTGAGTCCGCTGCGAAAAAGAGTGAGGAAATGGA
CAAATCCTTAGAATAAAAGCTTTCTAGACCAT
BS24407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13895-RA | 1500 | CG13895-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
| CG13895-RB | 1521 | CG13895-PB | 34..1521 | 29..1516 | 7440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13895-RA | 1924 | CG13895-RA | 231..1737 | 10..1516 | 7505 | 99.9 | Plus |
| CG13895-RB | 1945 | CG13895-RB | 271..1758 | 29..1516 | 7440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 706135..707622 | 1516..29 | 7440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:58:19 has no hits.
BS24407.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:21 Download gff for
BS24407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13895-RA | 234..1731 | 17..1514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:28 Download gff for
BS24407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13895-RA | 238..1735 | 17..1514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:05 Download gff for
BS24407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13895-RA | 238..1735 | 17..1514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:05 Download gff for
BS24407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 706137..707622 | 29..1514 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:28 Download gff for
BS24407.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 706137..707622 | 29..1514 | 100 | <- | Minus |
BS24407.pep Sequence
Translation from 16 to 1515
> BS24407.pep
MYSDNDDTHKNSNGSHRIRNVLTLEERVAAIRQYDIVPMYSKIARNFNCS
WEQIKSIVSNREAILEFHKATNRLSQPANKDAELRRRKLNFLGHCLYEYI
QRAQFYLHSDVNEEMIRNRAIEFRDLMQLDGFVPNKPWINHFKAAYNITL
SNRQITIVRRPPRSMDLRDIMSYCGRHTSMSCSLAPRSPEPALTSSDRPL
YRTKTLVTTSSQNQATSDEVHLRRKRKLAFLEKCVYEYIQRSQLVRQGRL
DLDNLRFVAISLRDILKIDSFFPDKVWLKHFKSRYNFNFTVGVQVTNRRL
PLSLDLRDIVSYCGRNEHKITLDHKKSQEELSQSDKPEVDQCPQVEPKPE
EFEHEEDDDCVAIEVPPELIEIKDDEDNDDEHNDNEDLPERATKRKSDEN
GGPIPCGLKIQKIQSLNESLPEDTELLPANSPGHYSETSDEAHLPRCVES
YKDALRLLKPLEEFVLMEENYRAIGLLTQLEKIFESAAKKSEEMDKSLE*
BS24407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13895-PA | 499 | CG13895-PA | 1..499 | 1..499 | 2611 | 100 | Plus |
| CG13895-PB | 506 | CG13895-PB | 1..506 | 1..499 | 2593 | 98.6 | Plus |
| ebd1-PA | 581 | CG3371-PA | 92..244 | 19..171 | 250 | 35.7 | Plus |
