BS24411.complete Sequence
1859 bp assembled on 2011-02-17
GenBank Submission: KX804062
> BS24411.complete
GAAGTTATCAGTCGACATGCCCTTCGGCCGCAAGTCCCCGCTGGAGGCAC
TGGCCCTTCCCGGCGTCATGCTCGCCTACAAGTACAGCCAGTTCCGCCAG
CGCCGCCGGGAGGCCGCCAGCCGACGGGTCACCGAGCGCGAACTCTCGGC
GCTGCACCATAAAATCGACAAACTACTGAGTAAACTGGAGGAGGAAAGCG
AGCCGGATCCTCCAACCTCCCAGGAGGACGAATGTGTGATCTGCATCAAT
GCCCGGGCCACCATGCAGACATCGCCATGTGGCCACCGCGTCGTCTGCCG
CCGCTGCTTTGTGAAGACCATTCAGAGTGCGGTGGCCCAACGACTGTTGC
CCCTTCGCTGCGTCATTTGTCGAGCGCGGGTCAATCGTCTGACCTCGTCC
TCGGGCACTTGGCGAATCCAGGAGTCGGCCAGCAGCTACTCAATGGGCGC
CAAGAGTTGGGCCTCCGCCGGAGTGGCCGCCGGCGGTGTGGTACCCTCGG
CGAGCTCCTACTCGATGAACGATGCGCACAGCGGCCACCATTCGTTCCAC
CAGCCCACGCTGCACAAGTCGGCGGTGGGACGGCATCACCCGCATCATTA
CGCCGCCCGAGGATCAGCCCATGCTCGAGTCTCCCAGTCGGACAGCCTGT
ACTCGATGAGCTCGACGGGATCGGCGGCTTCATCGGCCTCCGGTTATTCA
CACTACTCCAAGACGTCTTCCATATCGAGCAACGGTCCCTGCTCACCGGC
CTCGCCGGCCGTGGCTTCCAGCTCCAATCACCTGGCACCGCCATCGCCCA
CCACCCACCATCACAGTCATAGTCTGGCCTCACCCACTCCATCGGGATCA
TCGGGCAGTTCCCTTTCACCGCGGGAAAATGGAACTTCACATTCGCATCA
TGGTGGGTGTCCCATTGGTTGCTCCGGTGCCGTGCCAAGAAAACCGCTTC
ACACGCTCACCAATAGCTCATCCACGCCCATTTCCGGTTCATCGTCGAGC
GGAAGTGGGGGAGGAGGAGTGGGCAACGGCAACGGTAGTGTACCAAGTGG
AATGATGACGCCTACGCATACGTATCCTGGCCGAAGGCATGTAAAGAACC
GACTGATGGACATCCAGAACCGCCTGCCGCCGATCAAGGAGTTCCGCAGT
CCGGCCAAAGTGCCGCATCCTTCGCCCGTGCACGTCAGCAATCCCAGATT
TCGTTACTCCACTTATACAAAGTCCAGTGCCCATGAACTGGCTCCGTTGC
TGCGTGAATCCGGATCGTCGCCTCCGCCACGTCGCCCCAGTCCGATGAAC
ATCCAGCTGAGCTGCTCCGCACTGGCCCCGCCCCCTTTGAAGGCGGGCGG
GGCAAAGATCTGCCCACTGACCTCGAAGAACTCGCTGCCGAAAAACGCTT
ACGTGATGCCCAAGGATAAGAAGCAGCCAGCTTCTGTTCCGCAAGGGAAA
GCTACTGGTACTGCCTCCAAGTCGACTCCACAAGGAGCAGGCTGCTCGAG
GGCATCAGCTGGATGTTCTGCTGCCAATTCAGGATCAACTGGAGCTGGAT
CGGCTAGTAATCCCAAGCCCTCGTCAAGCTCTTCCAGTCGCAGTTTTCCG
CTTTTCTCCGCCGCCAGTAATCAGAGAGAGAAGGCTGACAATAAGAAGAA
CGAATCTGTTGAGCGCAAGAAAAAGGAGGAAAAGCTCAAGCTGAAGGCTG
AGAAGGAAGCCAGAAAGGAGGAAAAGCGACTGGCCAAGGAGGAGGAGCGT
CTGGCCAAGCTGCACGCCAAGGAGGAGAAGAAGCGGGGCAAGAAGGAGGC
CAAGGAGCTGCTGTTGGCCAACGATGGGAACAGCAAGAAGTGAAAGCTTT
CTAGACCAT
BS24411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8910-RA | 1827 | CG8910-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8910-RA | 3406 | CG8910-RA | 448..2274 | 17..1843 | 9135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16877001..16878037 | 1203..167 | 5185 | 100 | Minus |
| 2R | 25286936 | 2R | 16876505..16876932 | 1630..1203 | 2125 | 99.8 | Minus |
| 2R | 25286936 | 2R | 16894119..16894269 | 167..17 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 16875856..16875983 | 1843..1716 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 16876341..16876433 | 1718..1626 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:47:53 has no hits.
BS24411.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:05:24 Download gff for
BS24411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 447..2272 | 17..1842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:31 Download gff for
BS24411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 448..2273 | 17..1842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:37 Download gff for
BS24411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 448..2273 | 17..1842 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:37 Download gff for
BS24411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16894120..16894269 | 17..166 | 100 | | Minus |
| 2R | 16875857..16875981 | 1718..1842 | 100 | <- | Minus |
| 2R | 16876342..16876433 | 1626..1717 | 100 | <- | Minus |
| 2R | 16876510..16876931 | 1204..1625 | 100 | <- | Minus |
| 2R | 16877001..16878037 | 167..1203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:31 Download gff for
BS24411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12763362..12763486 | 1718..1842 | 100 | <- | Minus |
| arm_2R | 12763847..12763938 | 1626..1717 | 100 | <- | Minus |
| arm_2R | 12764015..12764436 | 1204..1625 | 100 | <- | Minus |
| arm_2R | 12764506..12765542 | 167..1203 | 100 | <- | Minus |
| arm_2R | 12781625..12781774 | 17..166 | 100 | | Minus |
BS24411.pep Sequence
Translation from 16 to 1842
> BS24411.pep
MPFGRKSPLEALALPGVMLAYKYSQFRQRRREAASRRVTERELSALHHKI
DKLLSKLEEESEPDPPTSQEDECVICINARATMQTSPCGHRVVCRRCFVK
TIQSAVAQRLLPLRCVICRARVNRLTSSSGTWRIQESASSYSMGAKSWAS
AGVAAGGVVPSASSYSMNDAHSGHHSFHQPTLHKSAVGRHHPHHYAARGS
AHARVSQSDSLYSMSSTGSAASSASGYSHYSKTSSISSNGPCSPASPAVA
SSSNHLAPPSPTTHHHSHSLASPTPSGSSGSSLSPRENGTSHSHHGGCPI
GCSGAVPRKPLHTLTNSSSTPISGSSSSGSGGGGVGNGNGSVPSGMMTPT
HTYPGRRHVKNRLMDIQNRLPPIKEFRSPAKVPHPSPVHVSNPRFRYSTY
TKSSAHELAPLLRESGSSPPPRRPSPMNIQLSCSALAPPPLKAGGAKICP
LTSKNSLPKNAYVMPKDKKQPASVPQGKATGTASKSTPQGAGCSRASAGC
SAANSGSTGAGSASNPKPSSSSSSRSFPLFSAASNQREKADNKKNESVER
KKKEEKLKLKAEKEARKEEKRLAKEEERLAKLHAKEEKKRGKKEAKELLL
ANDGNSKK*
BS24411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8910-PA | 608 | CG8910-PA | 1..608 | 1..608 | 3163 | 100 | Plus |
| spen-PH | 5458 | CG18497-PH | 1490..1912 | 208..597 | 172 | 22.5 | Plus |
| spen-PC | 5476 | CG18497-PC | 1508..1930 | 208..597 | 172 | 22.5 | Plus |
| spen-PG | 5487 | CG18497-PG | 1492..1914 | 208..597 | 172 | 22.5 | Plus |
| spen-PE | 5505 | CG18497-PE | 1510..1932 | 208..597 | 172 | 22.5 | Plus |
