BS24415.complete Sequence
1085 bp assembled on 2011-02-01
GenBank Submission: KX802977
> BS24415.complete
GAAGTTATCAGTCGACATGGGTAAGGACTACTACAAAATCCTGGGTCTGC
CCAAAACTGCCACCGACGATGAGATCAAAAAGGCCTACAGGAAACTGGCC
CTGCGTTATCATCCGGACAAAAACAAAGCCGCCAACGCCGAGGACAAGTT
CAAGGAGGTCGCCGAGGCGTACGAGGTTCTTTCGGACAAGAGCAAGCGGG
AGGTGTACGACAAATACGGCGAGGATGGTCTCAAGAGCGGAGGCACACGA
AACGGCGGTCCGTCGAGCAACTCGTTTACATATCAGTTCCACGGCGATCC
GCGGGCCACCTTCGCCCAGTTCTTTGGCAACAGCAATCCGTTCGCCTCGT
TCTTCGACATGGGCGACAACCTGTTCGACAAGAAGGTCTTCGATCTGGAC
ACGGAACCCGATTTCTTCTCCTCGCCCTTTGGCGGCATTGGGTCGCGACA
TGGTCTGGGAAGTGGCTTCAGGCCCTCTTTCAGATCACACTCCTTCAATG
TGCACACGCCGTTCAAGAAGGAGCAGAAGCAGGATCCGCCCGTCGAACAC
GATCTCTATGTGACGCTGGAGGAGATCTACCACGGCTGTGTTAAGAAAAT
GAAAATCTCCCGGCGCATCGTTCAGGCGGACGGCAGTTCCCGCAAGGAGG
AGAAGTTCCTGGCGATATCCATCAAGCCCGGCTGGAAGTCCGGCACCAAG
GTCACCTTCCAGAAGGAGGGCGACCAGGCGCCCGGAAAAATTCCCGCCGA
CATTGTGTTCATCATCCGGGACAAGCCGCACGCCATGTTCAAGCGCGAGG
GCAGCGATCTGCGCTACACGGCGAGACTGACGCTCAAGCAGGCTTTGTGC
GGCGTTGTCTTCCAAGTTCCTACCATGTCCGGCGACAAGTTGCGCATCAG
CACCATGCAGGAGATCATCAAGCCGAACACGGTGAAGCGCATCCAGGGAT
ACGGGCTGCCATTCCCCAAGGATACGACGCGCAAGGGCGACCTCCTGGTG
GCCTTCGACATTCAGTTCCCGGAGAAGCTGACCGCCGCCCAGAAGGAGGT
GCTCAAGGACATGTTATGAAAGCTTTCTAGACCAT
BS24415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5001-RD | 1053 | CG5001-PD | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG5001-RA | 1053 | CG5001-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
| CG5001-RB | 1053 | CG5001-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5001-RD | 1755 | CG5001-RD | 339..1391 | 17..1069 | 5265 | 100 | Plus |
| CG5001-RA | 1833 | CG5001-RA | 417..1469 | 17..1069 | 5265 | 100 | Plus |
| CG5001-RB | 1893 | CG5001-RB | 477..1529 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1192253..1192626 | 469..842 | 1870 | 100 | Plus |
| 2L | 23513712 | 2L | 1191968..1192199 | 241..472 | 1160 | 100 | Plus |
| 2L | 23513712 | 2L | 1196213..1196443 | 839..1069 | 1155 | 100 | Plus |
| 2L | 23513712 | 2L | 1191684..1191910 | 17..243 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 5751369..5751551 | 241..59 | 300 | 77.6 | Minus |
| 3L | 28110227 | 3L | 5750854..5751021 | 810..643 | 195 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:58:48 has no hits.
BS24415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:17 Download gff for
BS24415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RA | 415..1466 | 17..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:40 Download gff for
BS24415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RB | 477..1528 | 17..1068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:32 Download gff for
BS24415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5001-RB | 477..1528 | 17..1068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:32 Download gff for
BS24415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1192256..1192625 | 472..841 | 100 | -> | Plus |
| 2L | 1196216..1196442 | 842..1068 | 100 | | Plus |
| 2L | 1191684..1191909 | 17..242 | 100 | -> | Plus |
| 2L | 1191970..1192198 | 243..471 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:40 Download gff for
BS24415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1191684..1191909 | 17..242 | 100 | -> | Plus |
| arm_2L | 1191970..1192198 | 243..471 | 100 | -> | Plus |
| arm_2L | 1192256..1192625 | 472..841 | 100 | -> | Plus |
| arm_2L | 1196216..1196442 | 842..1068 | 100 | | Plus |
BS24415.pep Sequence
Translation from 16 to 1068
> BS24415.pep
MGKDYYKILGLPKTATDDEIKKAYRKLALRYHPDKNKAANAEDKFKEVAE
AYEVLSDKSKREVYDKYGEDGLKSGGTRNGGPSSNSFTYQFHGDPRATFA
QFFGNSNPFASFFDMGDNLFDKKVFDLDTEPDFFSSPFGGIGSRHGLGSG
FRPSFRSHSFNVHTPFKKEQKQDPPVEHDLYVTLEEIYHGCVKKMKISRR
IVQADGSSRKEEKFLAISIKPGWKSGTKVTFQKEGDQAPGKIPADIVFII
RDKPHAMFKREGSDLRYTARLTLKQALCGVVFQVPTMSGDKLRISTMQEI
IKPNTVKRIQGYGLPFPKDTTRKGDLLVAFDIQFPEKLTAAQKEVLKDML
*
BS24415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5001-PD | 350 | CG5001-PD | 1..350 | 1..350 | 1842 | 100 | Plus |
| CG5001-PA | 350 | CG5001-PA | 1..350 | 1..350 | 1842 | 100 | Plus |
| CG5001-PB | 350 | CG5001-PB | 1..350 | 1..350 | 1842 | 100 | Plus |
| CG5001-PC | 346 | CG5001-PC | 1..346 | 1..350 | 1805 | 98.9 | Plus |
| DnaJ-1-PA | 334 | CG10578-PA | 1..332 | 1..350 | 1034 | 57 | Plus |
