BS24417.complete Sequence
1184 bp assembled on 2011-02-01
GenBank Submission: KX804789
> BS24417.complete
GAAGTTATCAGTCGACATGGTGCAAATCTTTAAATTCCTGTTAAAATCCA
GCAAATCTACCGGTCGTGCCCACTTCCGGCCCACTTTTCTGGACACACTG
CGCCTAGCGGTTCGTGGAGGACATGGTGGAAATGGACTGCCCAAATACGG
AGGAGTTGGTGGCCAAGGCGGTTGCGTCTACTTGGTGGCAAAGGAAGGAC
TCACCCTTCGCAAGGTCGTCCAGGGATTGAAGGATAAGCGAGTGGCAGCA
TCCAGTGGCGAGGACAGTAGCAAAGCCAGCATCTTTGGACGCCGTGGAGC
TGACCAGAGGATCGAGGTGCCTGTGGGCGTCCAGGTATATGACGACCAAC
AAAAACTCATCGCCGACCTCGACGAGCACGAGGCGACATGCATTGTGGCG
GGCGGAGGTACTGGCGGATGCACGGCCACAAATTTTCTGGGACGTCCCGG
GGAGAATCGCACTGTAAATCTGGACCTAAAGCTAATAGCAGATGTGGGTC
TCGTGGGATTCCCCAACGCTGGCAAAAGCACCCTTCTTAAGGCCGTGTCC
AATGCCAAACCAAAAATTGCAGCTTATCCCTTTACCACCATCCGACCCCA
GATTGGAACCATCGAGTACAGGGACCTGCGCTCCATCACAGTTGCCGATC
TTCCCGGTCTGATCGAGGGCGCCCACGCGAACTTCGGCATGGGTCACAAG
TTCCTGAAGCACATCGAACGCACCCGCCTGCTGGTCTTCATGGTGGATAT
ATTCGGCTTCCAGCTGAGTCCCAAACATCCGCATCGCGACTGCTTGGCCA
ATGTGTATGCGCTCAACAAAGAGTTGGAGCTCTACGATCCATCGCTGCTG
GAGAAGCCCAGTGTCCTGCTGCTGAACAAAATGGACAAGGAGGGTGCCCA
CGAGATCTTTACCAAAGTTAAGCCGCTCGTCAGCGATTTGGCCAGCGGAC
TTGAACAGTGCCCCGAGGAACTGCGTCCGAAACAGGTGCTCAATTTCGAC
AGCATTGTCCCCATATCGGCCATGAACTCGTCGAAGATCACGCAAGTGAA
ATCCCAGCTAAGGAGGACCCTGGTGCGGCTGGCTGAGAAGCAGTTCCTGG
CGGACGAGGATCAGGTCAAGGAGAAGCTAAGACAGCGCGTTGGGGTGGTG
GGTCCAAAAATTACCTAGAAGCTTTCTAGACCAT
BS24417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10628-RA | 1152 | CG10628-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10628-RA | 1254 | CG10628-RA | 43..1194 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19757305..19757891 | 1168..582 | 2935 | 100 | Minus |
| 2L | 23513712 | 2L | 19757950..19758472 | 581..59 | 2615 | 100 | Minus |
| 2L | 23513712 | 2L | 19758532..19758573 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:59:06 has no hits.
BS24417.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:18 Download gff for
BS24417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10628-RA | 41..1192 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:48 Download gff for
BS24417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10628-RA | 43..1194 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:40 Download gff for
BS24417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10628-RA | 43..1194 | 17..1168 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:40 Download gff for
BS24417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19757305..19757891 | 582..1168 | 100 | <- | Minus |
| 2L | 19757950..19758472 | 59..581 | 100 | <- | Minus |
| 2L | 19758532..19758573 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:48 Download gff for
BS24417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19757305..19757891 | 582..1168 | 100 | <- | Minus |
| arm_2L | 19757950..19758472 | 59..581 | 100 | <- | Minus |
| arm_2L | 19758532..19758573 | 17..58 | 100 | | Minus |
BS24417.pep Sequence
Translation from 16 to 1167
> BS24417.pep
MVQIFKFLLKSSKSTGRAHFRPTFLDTLRLAVRGGHGGNGLPKYGGVGGQ
GGCVYLVAKEGLTLRKVVQGLKDKRVAASSGEDSSKASIFGRRGADQRIE
VPVGVQVYDDQQKLIADLDEHEATCIVAGGGTGGCTATNFLGRPGENRTV
NLDLKLIADVGLVGFPNAGKSTLLKAVSNAKPKIAAYPFTTIRPQIGTIE
YRDLRSITVADLPGLIEGAHANFGMGHKFLKHIERTRLLVFMVDIFGFQL
SPKHPHRDCLANVYALNKELELYDPSLLEKPSVLLLNKMDKEGAHEIFTK
VKPLVSDLASGLEQCPEELRPKQVLNFDSIVPISAMNSSKITQVKSQLRR
TLVRLAEKQFLADEDQVKEKLRQRVGVVGPKIT*
BS24417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10628-PA | 383 | CG10628-PA | 1..383 | 1..383 | 1954 | 100 | Plus |
| CG13390-PA | 381 | CG13390-PA | 40..351 | 10..312 | 426 | 33.6 | Plus |
| 128up-PA | 368 | CG8340-PA | 47..188 | 130..293 | 179 | 34.5 | Plus |
