BS24433.complete Sequence
1103 bp assembled on 2011-02-01
GenBank Submission: KX801142
> BS24433.complete
GAAGTTATCAGTCGACATGCCGCCTGTTAAGAAGCCCAAGGCGCAGAAGA
TCGAGAAGCAAAGCACGCCCAAAAAGCCCATCGATGCAGCCAAGAATGTG
GTTTCCGGACAGCTAAAGAAAAAGGTGACCAAGGCCAGGCCGCAGAAGCC
AAAGGGTCCAGAACGCGGCGTGGTCATTGTGAAGCACCTGCCTCACGGAT
TCTTCGAGCAGCAGCTGCGCCAGTACTTCCGACAGTTCGGTCGGGTGCTG
CGCGTCCGTTTGGCACGTTCGCTGCGCACCGGTAACAGCAAGGGCTACGC
CTTCGTGGAGTTCGAGTACCCGGAGGTGGCCAAGGTGGCTGCCGACACCA
TGGACAACTACCTGATGTTCCAGAAGGTGGTGAAGGCCACCTACATTCCA
CCAGAGAAGCAGACACTCAACTTCTTCAGGACTTCCTTGAAGAAGGTTGT
CAATAAGGCCGGCAAGGAAATCTATGTCTCGGATTTAACCAAAGCCACAC
AGCGCAGCGTGAAAAAGCAGAATAACTGGGATGAGTCCGCCTGCCAGAAG
CGCACCGTGGCCAATCTCAACAAGATCAAGAAGCTGCAGGAGAAGTACAA
GGATCTGGGCATCGACTTCTCCAACTTACTGGTGGAACCAGTAAAGAAAG
CAGCAGGCTCCGCTGAGGCATCTACAAGCCAGGCAGCCGCCAAGAAAGCC
GGTAAGAAACAAAAAACGGCCGCGAAGAAAGAACCAACGCTGGAGGATTT
GCTGGGCAACACCATCAACGAGGACTCCGATGATGAGGACTACGTTGATG
CATCCGATGATGAGTCCGATCTGGAGGCTGAGGAGGAGCAAGCGGACAGT
GAGCAGACCAGCGATGACAGCGACGAAGAGGAGGATTTATCACCGCCGCC
CAAGCAGAAAAAGACTAAGCTGGCTGATAAACTGAAACGCAAGCCCGGCA
CTGGTGGTGTGCAGAAGAAGAAAATAGCTCCGCCGGCTAAGAGCAACAAG
AATGCCGCCACCCAGAAGTTGCAGCTGGCCGCAGCCAAGTCGCTGGCCAA
ACCCTTGCCCAAGGGAAAGGCCAAGAAATCCAAGTAGAAGCTTTCTAGAC
CAT
BS24433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6937-RA | 1071 | CG6937-PA | 1..1071 | 17..1087 | 5340 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6937-RA | 1307 | CG6937-RA | 91..1167 | 17..1093 | 5355 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22585432..22586069 | 456..1093 | 3175 | 99.8 | Plus |
| 3R | 32079331 | 3R | 22585024..22585371 | 111..458 | 1725 | 99.7 | Plus |
| 3R | 32079331 | 3R | 22584863..22584958 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 566..661 | 738..833 | 110 | 59.8 | Plus |
BS24433.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:16 Download gff for
BS24433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6937-RA | 78..1148 | 17..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:32 Download gff for
BS24433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6937-RA | 91..1161 | 17..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:26 Download gff for
BS24433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6937-RA | 91..1161 | 17..1087 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:26 Download gff for
BS24433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22584863..22584958 | 17..112 | 100 | -> | Plus |
| 3R | 22585026..22585370 | 113..457 | 99 | -> | Plus |
| 3R | 22585434..22586063 | 458..1087 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:32 Download gff for
BS24433.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18410748..18411092 | 113..457 | 99 | -> | Plus |
| arm_3R | 18410585..18410680 | 17..112 | 100 | -> | Plus |
| arm_3R | 18411156..18411785 | 458..1087 | 100 | | Plus |
BS24433.pep Sequence
Translation from 16 to 1086
> BS24433.pep
MPPVKKPKAQKIEKQSTPKKPIDAAKNVVSGQLKKKVTKARPQKPKGPER
GVVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFE
YPEVAKVAADTMDNYLMFQKVVKATYIPPEKQTLNFFRTSLKKVVNKAGK
EIYVSDLTKATQRSVKKQNNWDESACQKRTVANLNKIKKLQEKYKDLGID
FSNLLVEPVKKAAGSAEASTSQAAAKKAGKKQKTAAKKEPTLEDLLGNTI
NEDSDDEDYVDASDDESDLEAEEEQADSEQTSDDSDEEEDLSPPPKQKKT
KLADKLKRKPGTGGVQKKKIAPPAKSNKNAATQKLQLAAAKSLAKPLPKG
KAKKSK*
BS24433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6937-PA | 356 | CG6937-PA | 1..356 | 1..356 | 1801 | 100 | Plus |
