BS24442.complete Sequence
1415 bp assembled on 2011-02-01
GenBank Submission: KX804082
> BS24442.complete
GAAGTTATCAGTCGACATGTCTACGAAACTGGAGCAGCAGCACTCGAAGC
CCATTCTGAGTCCAACTCGATCCCTGGACGAAGGTTTCGAAAGTGATCCG
GATCGGGTTTCCACCGATTCGGAGCATCAGACAAGTGGAACCACTAGCAC
CAGCACTTGCAACAACAGCAATGCAGCAAATACGGTCAGCAACAACAATG
CCAGTAAGCTCGCGCAGCTTAGTTCGGCGGCTACTGGGGGCGCCACTAAG
ACGACGTCCGGAGCAAATGCATCCAGCCCCTCAATGGTGAACTCCGTCAG
GGGCGCACTCACTTTGGCCGCCCCCCAGCTGCAGAGGCGGGAGTTCTTTG
CCAAGGATCAGGGGAAACTAAGGCATCAGGCACCCCCGCAACAGCCACGC
CTCCAGTACCAAAAACAACGACAGCCCCTCGTTCCAAGTGCCGCCTCCAG
TGTCCACAATCACCGGTTGACCGCGTCGATGCAGCAGGGATCTTCGGGAT
TGGGCAATAGTAGCCTGGGAACCGGAACTGGCACTGCTAACTACCGGCGC
GGACGTCGGCTCCACGTGAATCCACCTCGAACCGGCATTAGATCCCATTC
GGTGGACGCCATTTCGCGGCACAATCGCCACGGCTACGATCCAAGTAGCC
TGATCCTGAAGCACGACGGAAATGGCAATATAAGCAGCAGCAATGCCGGT
GCCACCGCCACCCGCATGCTGAACTACAAGTCGCCTGGCGGAGGCACTGC
AGCCGGAGCACCGGCAGCCGGACAGGCCCTACTCGTCCAACCGATTTCTA
GTGCCACCCTATCTCCACTGGTGGCAGCGGGCGTGGTCGATGTGGTCGAG
GGCGGTGGCTCCTCGCCGGTCATCGCCTCGGCCACCCACAGCCTGTATAC
CTTCTATCCGGCGGAGGGGAATCTCCAGGTGTGGCAGACGGAGTGCGGCG
ATCTCACCTACAAGTCCTCCCGAAATATGCATCAACTACACAAGGCACCC
GTGTGCTGGACGCAGTCCATTCCCAGACAGGCCAGAAGATACATAACTCC
GGCAGCAGCCGCCAATGCAACTGCGACCTCATCAACCTCAGCGTCAGGAG
GCGTGGGTGGCACCAACCTGGCGGTTTATCCCACGGCCACCGCCCAGGTT
TATCGCTCGAACAACGGCCTGGATGTTCTGGACTGCGCTGGACTGGAGCA
CCACAACGCGGCCACCACTTCCGGTCACTCAGGCAGCGGCTTCTCCCAGC
GCCTCAGGGAACTGGCCGCCTCCGCCGGACTGCTCTCCCTGAAGCCCCGC
CAGCCTCTCAAGCCGGTGATCAAGACGCGTGGCTCCCCCGGACCGGAGTT
CCCCAAGAAGGTCACCTTTAGTGCCTTTGCCACCGTGCAGGTGGTGTGAA
AGCTTTCTAGACCAT
BS24442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31176-RA | 1383 | CG31176-PA | 1..1383 | 17..1399 | 6900 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31176-RA | 2511 | CG31176-RA | 320..1704 | 16..1400 | 6910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21718319..21719341 | 1038..16 | 5100 | 99.9 | Minus |
| 3R | 32079331 | 3R | 21673359..21673722 | 1400..1037 | 1820 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 22:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6941 | 121..218 | 125 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2399 | 121..198 | 124 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6787 | 129..207 | 123 | 67.1 | Plus |
BS24442.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:23 Download gff for
BS24442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31176-RA | 319..1700 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:08 Download gff for
BS24442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31176-RA | 321..1702 | 17..1398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:54 Download gff for
BS24442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31176-RA | 321..1702 | 17..1398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:54 Download gff for
BS24442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21673361..21673720 | 1039..1398 | 100 | <- | Minus |
| 3R | 21718319..21719340 | 17..1038 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:08 Download gff for
BS24442.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17499083..17499442 | 1039..1398 | 100 | <- | Minus |
| arm_3R | 17544041..17545062 | 17..1038 | 99 | | Minus |
BS24442.pep Sequence
Translation from 16 to 1398
> BS24442.pep
MSTKLEQQHSKPILSPTRSLDEGFESDPDRVSTDSEHQTSGTTSTSTCNN
SNAANTVSNNNASKLAQLSSAATGGATKTTSGANASSPSMVNSVRGALTL
AAPQLQRREFFAKDQGKLRHQAPPQQPRLQYQKQRQPLVPSAASSVHNHR
LTASMQQGSSGLGNSSLGTGTGTANYRRGRRLHVNPPRTGIRSHSVDAIS
RHNRHGYDPSSLILKHDGNGNISSSNAGATATRMLNYKSPGGGTAAGAPA
AGQALLVQPISSATLSPLVAAGVVDVVEGGGSSPVIASATHSLYTFYPAE
GNLQVWQTECGDLTYKSSRNMHQLHKAPVCWTQSIPRQARRYITPAAAAN
ATATSSTSASGGVGGTNLAVYPTATAQVYRSNNGLDVLDCAGLEHHNAAT
TSGHSGSGFSQRLRELAASAGLLSLKPRQPLKPVIKTRGSPGPEFPKKVT
FSAFATVQVV*
BS24442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31176-PA | 460 | CG31176-PA | 1..460 | 1..460 | 2355 | 100 | Plus |
