BS24452.complete Sequence
1304 bp assembled on 2011-02-01
GenBank Submission: KX801799
> BS24452.complete
GAAGTTATCAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATT
TCTACTGGAATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCC
AACTACAATCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGG
CCAGATCATTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGC
TGACGGTGCCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAAC
TCGAGCTTGGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTA
TCGTCGGGAGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGG
CGGTTTTTGCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTG
AACCGGATCAGCACCAAGACTTATCTGGCCGGAATCCATTCGCCGAATCG
CGAAATGCCGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGAC
GTCTGGAAGGAGATGCCACTGATGCGAGAACAGGATCGACCGAGAAGCGA
ATCACCTTCACCCTGGCTCCCAGTTCGGCCGAATGCTCGCCGTCGGGTAG
CCAAACGACACTTACTCCCAAAAAGTTCGAGGCCATTGCCGAGGAGGAGA
AGGAGGACGACAAGGCCGATGAGGAGGAGGAGATCATGGAGGAGGTGGTG
CTGCGACCTCGCCTCATCGACCGGCATCCTCATCTGCTGGCCAACCCCAG
TGGACTGACGACCACGCCCAAACGGATCCTGCGATCCGCCAAGAGCGTTC
CGCACATGAATGTCCGTTCGTCGGCCAGTGAGACGGATATATTCTCCATT
AGCGGTACGATGACCGGAAGCAGTCAGATCAGCATGACGCCGGAGGTGCC
ATCGATATCGTTCAGTAATCTGCCTAAGAACTACGAGGACACGCCCACTA
TTGAGAAGTACCGGGTATCGCAGAGTCTCTATTCCATTCAAACGGCGAAT
GCTGCTCGGGCCACACAGGATGATTACTCCATGCCGCGCTACTTCCGTCG
ATCTGCCATGCTATTGACCCAGAGCTCTGAGGTGCTGCCCGGCGCCAGTT
CACTGGCCTCCATGTCGCCATCGATGGCCTCGTCCTCTGCCTCGCCCGGG
TCCTCCAAGGACGAACTGCGACGGCCAGAGAAGGAGAAGAGCAAACGACT
CCAGATGCTGCGTGGCAATCTACCGCCCTTACTTATTCATTCCGTGTCCT
TCAAACGAAATCGCGACGAGGGCAAGCAGGTTGACTAGAAGCTTTCTAGA
CCAT
BS24452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17834-RE | 1272 | CG17834-PE | 1..1272 | 17..1288 | 6345 | 99.9 | Plus |
| CG17834-RC | 1272 | CG17834-PC | 1..1272 | 17..1288 | 6345 | 99.9 | Plus |
| CG17834-RA | 1272 | CG17834-PA | 1..1272 | 17..1288 | 6345 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17834-RE | 1749 | CG17834-RE | 275..1546 | 17..1288 | 6345 | 99.9 | Plus |
| CG17834-RC | 1844 | CG17834-RC | 370..1641 | 17..1288 | 6345 | 99.9 | Plus |
| CG17834-RA | 2034 | CG17834-RA | 560..1831 | 17..1288 | 6345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8540456..8541236 | 508..1288 | 3905 | 100 | Plus |
| 2L | 23513712 | 2L | 8537229..8537464 | 275..510 | 1165 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8536893..8537071 | 98..276 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 8536207..8536268 | 37..98 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:01:05 has no hits.
BS24452.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:22 Download gff for
BS24452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RC | 368..1639 | 17..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:59 Download gff for
BS24452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RA | 560..1831 | 17..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:43 Download gff for
BS24452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RA | 560..1831 | 17..1288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:43 Download gff for
BS24452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
| 2L | 8536060..8536079 | 17..36 | 100 | -> | Plus |
| 2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
| 2L | 8540458..8541236 | 510..1288 | 100 | | Plus |
| 2L | 8537231..8537463 | 277..509 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:59 Download gff for
BS24452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8536060..8536079 | 17..36 | 100 | -> | Plus |
| arm_2L | 8536207..8536268 | 37..98 | 100 | -> | Plus |
| arm_2L | 8536894..8537071 | 99..276 | 100 | -> | Plus |
| arm_2L | 8537231..8537463 | 277..509 | 99 | -> | Plus |
| arm_2L | 8540458..8541236 | 510..1288 | 100 | | Plus |
BS24452.pep Sequence
Translation from 16 to 1287
> BS24452.pep
MCRCCQNCWEDFYWNCFEERFCYDESIANYNPEEDEDYLASRKNGQIIGR
IQPTSVDNNNSLTVPQPICDQPQMRQGNSSLGLSLMSAKIHEEDYRRETQ
INVPNLGPEILAVFANSQIFQDHQPTKLNRISTKTYLAGIHSPNREMPTT
PRLSDQDRLLRRLEGDATDARTGSTEKRITFTLAPSSAECSPSGSQTTLT
PKKFEAIAEEEKEDDKADEEEEIMEEVVLRPRLIDRHPHLLANPSGLTTT
PKRILRSAKSVPHMNVRSSASETDIFSISGTMTGSSQISMTPEVPSISFS
NLPKNYEDTPTIEKYRVSQSLYSIQTANAARATQDDYSMPRYFRRSAMLL
TQSSEVLPGASSLASMSPSMASSSASPGSSKDELRRPEKEKSKRLQMLRG
NLPPLLIHSVSFKRNRDEGKQVD*
BS24452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17834-PE | 423 | CG17834-PE | 1..423 | 1..423 | 2186 | 100 | Plus |
| CG17834-PC | 423 | CG17834-PC | 1..423 | 1..423 | 2186 | 100 | Plus |
| CG17834-PA | 423 | CG17834-PA | 1..423 | 1..423 | 2186 | 100 | Plus |
| CG17834-PF | 208 | CG17834-PF | 1..166 | 1..166 | 899 | 99.4 | Plus |
| CG17834-PD | 208 | CG17834-PD | 1..166 | 1..166 | 899 | 99.4 | Plus |
