BS24465.complete Sequence
1565 bp assembled on 2011-02-01
GenBank Submission: KX802524
> BS24465.complete
GAAGTTATCAGTCGACATGGCCCCGCCAAAGGCCGCCAGCCACCGTCCGG
CGGTGCGGCGCAAGAAGTCGGGCACCCTGGTGGACTCCATCCTGGACAAG
TACCTCAACGTGCGCTTCTTCAAGTATCTGCTCCTGGAGCCGGCCGCTCT
GCCCATAGTTGGCCTCTTCGTGCTCCTGGCGGAGCTGGTCATCAACGTGG
TGGTCATCCAGCGGGTGCCCTACACAGAGATCGACTGGGTGGCTTACATG
CAGGAGTGCGAGGGCTTCCTGAACGGCACCACCAACTACAGTCTGTTGCG
CGGCGACACAGGACCTCTTGTGTATCCAGCCGCCTTCGTGTATATCTACT
CGGCTCTCTACTACGTCACGTCCCACGGAACGAACGTTCGCCTGGCGCAG
TACATCTTCGCCGGGATCTACCTGCTCCAGCTGGCCCTGGTGCTGAGGCT
GTACTCGAAGAGCAGAAAGGTGCCGCCGTATGTGCTAGTGCTCAGTGCCT
TCACGTCGTATCGGATCCACTCGATATACGTGCTGCGACTGTTCAACGAT
CCGGTGGCAGTGCTGCTCCTCTATGCCGCACTCAATTTGTTCCTGGACAG
AAGGTGGACCCTGGGTAGCACCTTCTTCAGCTTGGCGGTGGGCGTTAAGA
TGAACATCCTGCTGTTTGCGCCTGCGCTCTTGCTGTTCTACTTGGCCAAC
CTGGGACTTCTGCGGACGATCCTGCAGCTGGCTGTCTGCGGAGTGATACA
ACTGCTGCTGGGCGCTCCTTTCCTGCTCACCCATCCTGTGGAGTATCTGC
GGGGCAGCTTTGATTTGGGACGCATCTTCGAGCACAAGTGGACGGTCAAC
TATCGCTTCCTGAGCAGAGATCTGTTCGAGAACCGCACCTTCCACGTTTC
GCTTTTGGGCCTGCATCTGCTGCTCCTGCTGGCCTTCGCCAAGCCCACTT
GGACCTTTTTCCAGAGCTACGTGCGCCTGCGCCGTATTGAGGATCAGCTG
CAGCCGCAAATAGCCCAGCAGAACCTCGAGCTGAACGCGCAGAAAAGACC
AAAGAAAGTGGAAAAGGACAAGGACAAGGACCAGAAGAAGTTTACAACCG
AGCAGCAATCCTTCCTGAAGGCCTTCGAGAAGAGCCTGCAGAAGGCGTCT
GGAGGAAAGGCCACTCCGGCACCCGCACAGGCGGAACCGGAACGCTATGG
CATCCACTTCGATCGCTGCACCCAGCTGGCCCTGCTGCCGTTCTTCCTGT
GCAACCTGGTGGGCGTGGCCTGCTCCCGATCCTTGCACTATCAGTTCTAC
GTCTGGTACTTCCACTCGCTACCCTATTTGGCCTGGTCGACGCCGTACTC
GCTGGGCGTGCGCTGCCTGATCCTCGGACTGATTGAGTACTGCTGGAACA
CCTATCCCAGTACGAACTTCTCCAGCGCTGCCCTTCACTTCACCCACATC
ATACTGCTCGCTGGGGTGGCCAAGCAGCTTGTCCAGACCATGCGGATTAA
TAATGCGGCCAAGAGGGAGCAGCAGGAGCAACAGAAAAAGCTGCAGTAAA
AGCTTTCTAGACCAT
BS24465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)not-RA | 1533 | CG4084-PA | 1..1533 | 17..1549 | 7650 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)not-RA | 1704 | CG4084-RA | 80..1614 | 17..1551 | 7660 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23705529..23706778 | 1551..302 | 6235 | 99.9 | Minus |
| 2R | 25286936 | 2R | 23709427..23709713 | 303..17 | 1435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:59:50 has no hits.
BS24465.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:19 Download gff for
BS24465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 1876..3406 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:12 Download gff for
BS24465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 80..1610 | 17..1547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:00 Download gff for
BS24465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)not-RA | 80..1610 | 17..1547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:00 Download gff for
BS24465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23705533..23706777 | 303..1547 | 99 | <- | Minus |
| 2R | 23709428..23709713 | 17..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:12 Download gff for
BS24465.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19593056..19594300 | 303..1547 | 99 | <- | Minus |
| arm_2R | 19596951..19597236 | 17..302 | 100 | | Minus |
BS24465.pep Sequence
Translation from 16 to 1548
> BS24465.pep
MAPPKAASHRPAVRRKKSGTLVDSILDKYLNVRFFKYLLLEPAALPIVGL
FVLLAELVINVVVIQRVPYTEIDWVAYMQECEGFLNGTTNYSLLRGDTGP
LVYPAAFVYIYSALYYVTSHGTNVRLAQYIFAGIYLLQLALVLRLYSKSR
KVPPYVLVLSAFTSYRIHSIYVLRLFNDPVAVLLLYAALNLFLDRRWTLG
STFFSLAVGVKMNILLFAPALLLFYLANLGLLRTILQLAVCGVIQLLLGA
PFLLTHPVEYLRGSFDLGRIFEHKWTVNYRFLSRDLFENRTFHVSLLGLH
LLLLLAFAKPTWTFFQSYVRLRRIEDQLQPQIAQQNLELNAQKRPKKVEK
DKDKDQKKFTTEQQSFLKAFEKSLQKASGGKATPAPAQAEPERYGIHFDR
CTQLALLPFFLCNLVGVACSRSLHYQFYVWYFHSLPYLAWSTPYSLGVRC
LILGLIEYCWNTYPSTNFSSAALHFTHIILLAGVAKQLVQTMRINNAAKR
EQQEQQKKLQ*
BS24465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)not-PA | 510 | CG4084-PA | 1..510 | 1..510 | 2632 | 100 | Plus |
