BS24471.complete Sequence
1358 bp assembled on 2011-02-01
GenBank Submission: KX804658
> BS24471.complete
GAAGTTATCAGGGGACATGTGTATATCGGAAACTAAGGAACCTCCGCATC
TTCCAATTTCCAATTCTGCAGGACAAATATCCAAAATGCTGAAGCCGGCC
CAGAACAAGTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCTACGC
CACCGGCTCATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGCAACG
TGGGACGCATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTTTATA
CGACTGCAGGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTACCAC
CTACACCACCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGTCATT
ACGACTTGCCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAATCCC
ATAAAAATGAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGCACTC
CATGTCGGCCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGACAAGG
CAGGCAAAGGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGTGGAG
GAGAAGGGCAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCAGCGA
GGAGATGAAGAACAATGCGTACGACAACAACTGTGATCAAAAGAATATCC
GACGTCGTGTCTACGATGCGCTCAACGTACTGATGGCAATCAATGTTATT
TCCAAGGACAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATTCGAC
AGAGACATTTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCGCGAGCGAA
TAAAACAGAAAAACGAAATGTTGCGCGAAATGATCATGCAGCATGTGGCG
TTCAAGGGATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGCGTGGT
GCCTTCCCCGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAACACGC
ACAAGTCCACGAAAATCAACTGCAGTGTGACCAACGACAAGTCCGAATAC
ATATTCAAGTTCGACAAAACCTTCGAAATGCACGATGACATTGAGGTGCT
CAAGCGTATGGGATTCCTATTGGGACTGGATAAGGGCGAATGCACGCCGG
AGAACATTGAACGAGTCAAGTCGTGGGTGCCTCCAAACCTTGCCAAATAC
GTAGAAGCCTACGGCACCGGCAAGACTGGCGAAAATATGTACGAATCGGA
TGACGAGGACAATGAGTTCAACGGGTACCTGGAGTCGGCCAATGAGTCCC
AGGGCTTTGCACAACACTCGGCACAACACACCACCGATGGCGAGTTCAAG
CTGGAGATGGATGATGACGAGCTGGACGACGACATTGATTGAAAGCTTTC
TAGACCAT
BS24471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RB | 1326 | CG4654-PB | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| Dp-RA | 1338 | CG4654-PA | 67..1338 | 71..1342 | 6360 | 100 | Plus |
| Dp-RC | 1254 | CG4654-PC | 1..1254 | 86..1342 | 6205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RB | 2448 | CG4654-RB | 91..1416 | 17..1342 | 6630 | 100 | Plus |
| Dp-RA | 2526 | CG4654-RA | 680..1951 | 71..1342 | 6360 | 100 | Plus |
| Dp-RC | 1913 | CG4654-RC | 69..1338 | 70..1342 | 6285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226002..13226335 | 421..754 | 1670 | 100 | Plus |
| 2R | 25286936 | 2R | 13226402..13226641 | 753..992 | 1200 | 100 | Plus |
| 2R | 25286936 | 2R | 13225412..13225625 | 17..230 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 13226984..13227170 | 1156..1342 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 13225807..13225938 | 289..420 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13226845..13226929 | 1073..1157 | 425 | 100 | Plus |
| 2R | 25286936 | 2R | 13226700..13226783 | 991..1074 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 13225690..13225751 | 229..290 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:00:16 has no hits.
BS24471.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:20 Download gff for
BS24471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 89..1413 | 17..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:27 Download gff for
BS24471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 91..1415 | 17..1341 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:13 Download gff for
BS24471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 91..1415 | 17..1341 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:13 Download gff for
BS24471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13226002..13226335 | 421..754 | 100 | -> | Plus |
| 2R | 13225412..13225624 | 17..229 | 100 | -> | Plus |
| 2R | 13225691..13225751 | 230..290 | 100 | -> | Plus |
| 2R | 13225809..13225938 | 291..420 | 100 | -> | Plus |
| 2R | 13226404..13226639 | 755..990 | 100 | -> | Plus |
| 2R | 13226700..13226782 | 991..1073 | 100 | -> | Plus |
| 2R | 13226846..13226929 | 1074..1157 | 100 | -> | Plus |
| 2R | 13226986..13227169 | 1158..1341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:27 Download gff for
BS24471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9113909..9114144 | 755..990 | 100 | -> | Plus |
| arm_2R | 9114205..9114287 | 991..1073 | 100 | -> | Plus |
| arm_2R | 9114351..9114434 | 1074..1157 | 100 | -> | Plus |
| arm_2R | 9114491..9114674 | 1158..1341 | 100 | | Plus |
| arm_2R | 9113507..9113840 | 421..754 | 100 | -> | Plus |
| arm_2R | 9112917..9113129 | 17..229 | 100 | -> | Plus |
| arm_2R | 9113196..9113256 | 230..290 | 100 | -> | Plus |
| arm_2R | 9113314..9113443 | 291..420 | 100 | -> | Plus |
BS24471.pep Sequence
Translation from 16 to 1341
> BS24471.pep
MCISETKEPPHLPISNSAGQISKMLKPAQNKSEMEGGKPVAVVYATGSSA
RNSGSASGIGNVGRMGAFSQMGSQGQFIRLQDNGLSIPKTEAGTTYTTVS
AQKTSGAGSGHYDLPLKGDRYVKFTPNPIKMKSKLHAIQSNSLHSMSASS
SSVQRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSEEMKNN
AYDNNCDQKNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLA
LEEENCQRRERIKQKNEMLREMIMQHVAFKGLVERNKRNESQGVVPSPNA
SIQLPFIIVNTHKSTKINCSVTNDKSEYIFKFDKTFEMHDDIEVLKRMGF
LLGLDKGECTPENIERVKSWVPPNLAKYVEAYGTGKTGENMYESDDEDNE
FNGYLESANESQGFAQHSAQHTTDGEFKLEMDDDELDDDID*
BS24471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-PB | 441 | CG4654-PB | 1..441 | 1..441 | 2292 | 100 | Plus |
| Dp-PA | 445 | CG4654-PA | 20..445 | 16..441 | 2199 | 99.5 | Plus |
| Dp-PC | 417 | CG4654-PC | 1..417 | 24..441 | 2155 | 99.8 | Plus |
