BS24481.complete Sequence
2147 bp assembled on 2011-02-17
GenBank Submission: KX805978
> BS24481.complete
GAAGTTATCAGTCGACATGGATAGCAGCAGCGAACAGTTGAACGGATCGG
GAGCTTTGAATTTCAAGCGGCCCAAGGATTCTTCGGAGAATGCCACAAAC
AGCCACACAAATAATGGCAATTCTTCGGGCAGCCCCAAAATGGGAAGTCG
TCGGATTTTCACGCCCCACTTTAAGCTGCAAGTCCTCGAATCATACAGGA
ATGATAATGATTGCAAGGGCAATCAACGGGCCACGGCCAGGAAATACAAC
ATTCACCGCCGGCAAATCCAAAAATGGTTGCAATGCGAGTCAAATTTGCG
ATCATCGGTGGCCAACAATCAGCAACAGCAGCAGCAGCAGCAACAGCAAC
AGCAGCAACAACAGCAGCAGCAGCAACTACTCCCACAGCAATCGGTATCG
CCGACACCGGCGGTCAAGGTGTTCCATCAGCTGAGCCATCCGCTGGTGCA
CCAGTTGCATCACCATCACGCCGCCGCGGTGGGTCATCATCATCATCATG
CCGCCCACCATCATGCCGCCCATCATCATCACGCTGCAGCAGCAGCGGCG
GCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCCCACCATCATGCCGCCCA
CCATTTGCTGGCAGCCAATGGCATGGTTCCACACCCCCTGGCCGCCCATC
CCCACTTGCATGTCCCGGTGGCAATGCATCCTCAAATGCAGCATCAGAAG
GAGCAACAGCAGCAGCAGCAGCAGTTGCAGCAGGAGCAGCAGCAACAGGA
TCAGCAGCAGTCACAGCAGGAGACACCTGCAACCATTGCTACCAATGGCA
GCAATCAGGGATCCTCGAATGTCCTTTCGGCGGCCAAAATAGCCGCTGTT
GTTGCCGCCGCCATGGCCACCAGCAATGGCAATCCCACACCGACAGCAAC
AATCCCCGCCAGCAGCAGCAGCAGCAGCAACACATTGCCGAGCAGCAATA
ACAGTAGTTGCCACAACAGCAGCAGCAGCAGCAATAGCTGCAACAGCAAC
CAAGTGCCAATACAAGTGCCAATCCTGAGCGGATCCCCTGGGTCCACATC
GTCAGCCAGTCACATTCCACATGTGCCCTTTGCCTACCATCACAATCTGC
ATGGCTATTTGGAGAATCGACTGGAGGCGGTTGCCACACCAGCCCCCATG
GACCTCTCTCTCGGATCCTCTGCCCGCCGTCAAATGCAGTTGCACGAAAA
GGATCCATCTGGTGTGGATCTCACTTTCCGCAAACGTAAGGTCATCACTA
GTCCGATGCAGCCGGATAAGATTAGTAAGCTGGAGGAGGTGATCAAGAAG
GAGCCCGAAACGGAAACGGAGAACGAGGATGTGGAGGTGGACGTGGAGAC
GGAGCAGCCGGAGGAGCACAAGCTGCCCTCTAAACAGGTCAAGCTATTTA
AGCCCTATTTGCTGGACGATGATGAGGAGCAGGATCATCATCATCATCAC
CATCACCATCGGCAGGAGGATTTGGATGAGGGAGCTGCCGAGGAGGAGCA
GGACGACGAGGAAGAGTCCCGCTATGCCGACGATGATGAGGTGGACTCCA
AGGAGGCGGCCGACAAGAAACAGCGTCGCCTCAAGAAAAAGCCATCGGCA
ATCAACGAACAAAGGGAACCCATCATCTGGAGCAACCATCCGTATCCCGG
TGGCTGTGTATCGCCCGGCAGTTCGATCACCAGCAGCTTTCAGTGCCCCA
CCAGTATGCAACAGCAGCAGACATTTCCCGTCGCCGGCGGGAGTCCTAAT
CAGCAATTTCAGGACAACTGCAGCTCCAGCAAAGCCACCACGCCCCTCAG
CCCATTCTCGGCGCCCGCCCTCTCGCCCACCGGCTTCTGTTGCCCCAAAG
GATCGCCCGTTTCCGGTTACGAGAGCAGCTCATCCACCTACAGCGACAGC
GGCAGCAACTACAGCCTCAATCTCCAGCTGCATGCCGTCTACAACGACAA
TCTGATGTACATGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCATCACC
TGCAACATCAGCAGCACCTGCAGCGCTGGCTGGATCAGGAGTCCTTGGCC
ACTGCGAGGACATCATCCGTCAACCGACCACTGATTCTCGTGGCGGATAC
TGCGCCCACAAACCTGACCCTGGTGGCCTAAAAGCTTTCTAGACCAT
BS24481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 2115 | CG9653-PA | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 3194 | CG9653-RA | 534..2649 | 16..2131 | 10580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7308472..7310587 | 16..2131 | 10580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:39 has no hits.
BS24481.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:05:22 Download gff for
BS24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 533..2645 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:50 Download gff for
BS24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 535..2647 | 17..2129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:03 Download gff for
BS24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 535..2647 | 17..2129 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:03 Download gff for
BS24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7308473..7310585 | 17..2129 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:50 Download gff for
BS24481.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7202506..7204618 | 17..2129 | 100 | | Plus |
BS24481.pep Sequence
Translation from 16 to 2130
> BS24481.pep
MDSSSEQLNGSGALNFKRPKDSSENATNSHTNNGNSSGSPKMGSRRIFTP
HFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSVAN
NQQQQQQQQQQQQQQQQQQQLLPQQSVSPTPAVKVFHQLSHPLVHQLHHH
HAAAVGHHHHHAAHHHAAHHHHAAAAAAAAAAAAAAAAAHHHAAHHLLAA
NGMVPHPLAAHPHLHVPVAMHPQMQHQKEQQQQQQQLQQEQQQQDQQQSQ
QETPATIATNGSNQGSSNVLSAAKIAAVVAAAMATSNGNPTPTATIPASS
SSSSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQVPILSGSPGSTSSASHI
PHVPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQLHEKDPSGV
DLTFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEVDVETEQPEE
HKLPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAAEEEQDDEEE
SRYADDDEVDSKEAADKKQRRLKKKPSAINEQREPIIWSNHPYPGGCVSP
GSSITSSFQCPTSMQQQQTFPVAGGSPNQQFQDNCSSSKATTPLSPFSAP
ALSPTGFCCPKGSPVSGYESSSSTYSDSGSNYSLNLQLHAVYNDNLMYMQ
QQQQQQQQQHHLQHQQHLQRWLDQESLATARTSSVNRPLILVADTAPTNL
TLVA*
BS24481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-PA | 704 | CG9653-PA | 1..704 | 1..704 | 3713 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 22..300 | 15..301 | 262 | 31.8 | Plus |
| Smr-PE | 3601 | CG4013-PE | 22..300 | 15..301 | 262 | 31.8 | Plus |
| Smr-PD | 3601 | CG4013-PD | 22..300 | 15..301 | 262 | 31.8 | Plus |
| Smr-PG | 3607 | CG4013-PG | 167..611 | 47..481 | 255 | 24.4 | Plus |
| Smr-PF | 3601 | CG4013-PF | 188..605 | 75..481 | 247 | 25.2 | Plus |
| Smr-PE | 3601 | CG4013-PE | 188..605 | 75..481 | 247 | 25.2 | Plus |
| Smr-PD | 3601 | CG4013-PD | 188..605 | 75..481 | 247 | 25.2 | Plus |
