BS24486.complete Sequence
749 bp assembled on 2011-02-01
GenBank Submission: KX805320
> BS24486.complete
GAAGTTATCAGTCGACATGGCAACAGCAACTGGCTCAAGCTGCTCCACCA
GTAACGGCAGTGGCAGCAGCAGCAACAGCAACCACAACAGCGCTGCGGTG
CAGCAACATCCGGTGGCATTCATCGAGTTCAAGGACCCACCGACCGCGTC
TCAGGCCATGCAGCAGCTGCAGGGTAAATATCTGCTCAGCTCCGATCGCG
GTTCCATCCGCATCGAGTTTGCGCGCAGCAAAATGATCAACGAGGTGACC
ATAATGAACACCAAGGCACCGCCACCACCACCACCCACTGCTGTTGCTGC
TACTGTTGCACCACCGCCACCGCCAGCACCCATGTACATCCTGAACGGCG
GTGGGGGGGTCGAGCATTTGCTGGTCCCAGCACCACCGCCGTCGGCACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAACTCCAGATGCAGCAACTGCAACA
GCAGATGCACCTGCAGCAGCAACATCAACAGCAGCAGCAACTCCAATTGA
CCGTGGCAGCACCCTGCACTGCAGCAAGCACCACCACCCACAGCAGCACC
ACTAGCGTTGTTGTTAACTCACTACAGCACCACCAACTTCATCATCCAAA
TCAGCACCACCAAAATCATCTCTTTAGAGACCAACAGCAGCAGCATCAAC
AGCAAGCAACAATCAAGCAACAATCAGCAACAACAAAGGAGCGGGTATGG
AATCACGGCATGATTTGCTCGCTAAAAAGCTAGAAGCTTTCTAGACCAT
BS24486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpo-RS | 2909 | CG43738-PS | 2247..2862 | 16..631 | 3080 | 100 | Plus |
| cpo-RQ | 2289 | CG43738-PQ | 2208..2289 | 632..713 | 410 | 100 | Plus |
| cpo-RP | 2526 | CG43738-PP | 2208..2255 | 687..734 | 240 | 100 | Plus |
| cpo-RS | 2909 | CG43738-PS | 2863..2909 | 687..733 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpo-RR | 7247 | CG43738-RR | 3945..4663 | 16..734 | 3595 | 100 | Plus |
| cpo-RY | 6131 | CG43738-RY | 2831..3547 | 16..734 | 3530 | 99.7 | Plus |
| cpo-RX | 6116 | CG43738-RX | 2869..3484 | 16..631 | 3080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18011098..18011713 | 16..631 | 3080 | 100 | Plus |
| 3R | 32079331 | 3R | 18013148..18013195 | 687..734 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2987 | 20..655 | 318 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2971 | 20..618 | 312 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2984 | 437..686 | 282 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2990 | 393..619 | 275 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2923 | 49..688 | 254 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2959 | 371..557 | 248 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7210 | 20..501 | 202 | 56.7 | Plus |
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1124..1244 | 567..685 | 193 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6934 | 20..121 | 162 | 67.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1069..1164 | 20..114 | 161 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1163 | 20..91 | 159 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6836 | 20..91 | 158 | 70.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1151 | 21..91 | 153 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6802 | 46..112 | 152 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2853 | 20..110 | 150 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1037..1141 | 10..112 | 150 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7212 | 53..559 | 146 | 54.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3270..3344 | 36..112 | 146 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6887 | 20..91 | 141 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6857 | 20..91 | 140 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2603..3005 | 20..460 | 136 | 53.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2889 | 20..110 | 133 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1520..1584 | 20..82 | 131 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1584 | 24..91 | 130 | 67.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1129 | 38..112 | 120 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1589 | 44..118 | 111 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2828 | 47..112 | 111 | 67.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 662..727 | 104..38 | 107 | 64.2 | Minus |
BS24486.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:15 Download gff for
BS24486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RB | 2758..3474 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:26 Download gff for
BS24486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RN | 2832..3548 | 17..733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:20 Download gff for
BS24486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpo-RR | 3946..4662 | 17..733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:20 Download gff for
BS24486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18013148..18013194 | 687..733 | 100 | | Plus |
| 3R | 18011099..18011713 | 17..631 | 100 | -> | Plus |
| 3R | 18012096..18012150 | 632..686 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:26 Download gff for
BS24486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13836821..13837435 | 17..631 | 100 | -> | Plus |
| arm_3R | 13837818..13837872 | 632..686 | 100 | -> | Plus |
| arm_3R | 13838870..13838916 | 687..733 | 100 | | Plus |
BS24486.pep Sequence
Translation from 16 to 732
> BS24486.pep
MATATGSSCSTSNGSGSSSNSNHNSAAVQQHPVAFIEFKDPPTASQAMQQ
LQGKYLLSSDRGSIRIEFARSKMINEVTIMNTKAPPPPPPTAVAATVAPP
PPPAPMYILNGGGGVEHLLVPAPPPSAQQQQQQQQQQLQMQQLQQQMHLQ
QQHQQQQQLQLTVAAPCTAASTTTHSSTTSVVVNSLQHHQLHHPNQHHQN
HLFRDQQQQHQQQATIKQQSATTKERVWNHGMICSLKS*
BS24486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpo-PS | 962 | CG43738-PS | 750..955 | 1..206 | 1073 | 99.5 | Plus |
| velo-PC | 1833 | CG10107-PC | 50..153 | 91..227 | 164 | 36.7 | Plus |
| velo-PA | 1833 | CG10107-PA | 50..153 | 91..227 | 164 | 36.7 | Plus |
| ct-PD | 2165 | CG11387-PD | 565..706 | 95..231 | 163 | 33.1 | Plus |
| ct-PC | 2383 | CG11387-PC | 783..924 | 95..231 | 163 | 33.1 | Plus |
