BS24487.complete Sequence
884 bp assembled on 2011-02-02
GenBank Submission: KX804619
> BS24487.complete
GAAGTTATCAGTCGACATGGAGGAACCGAAAAGTGTATCCACAGCGGAGC
TTCCCAGCACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGTCCAAC
AACGTGAGCTACGACAAGATAGCCTGGACTCGGGATATCACAGAACCCTT
GGCTGAGGAGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTCGATTC
CAACCAATTCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGTATTCC
TTTACTGGAGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAGGGTGG
CTATCCATTCGGCGGCACCGATACGGACACAAAAGCCAACGAAAAGGACA
AGGAGAAGGAACATACCGCAGACGACTCACTCTACGAGTGCAACATATGC
CTGGACACCGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTGTTCTG
CTGGCCGTGCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAAACTCT
GTCCCGTTTGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGCTGTAC
GGAAGAAATAGTACACACCAGGAAGATCCACGTAACAAAGTTCCACCACG
CCCCGCTGGACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCCTGGAT
TCGGATTCGGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTTTTCCT
TTCGGGTTCATAACATCTAGGCTCAACTTTTTCGAACCACGTCCACCTGC
TGATATTAGAAGGCTACACGAAGATGAACCCTGGGCCCTGTCAAAACTGT
TCTGGCATTTTGTCGTTTTTGTGATATATGGGCTGCTCGTTCCAATAGTG
CACGGATCATCCCGATAAAAGCTTTCTAGACCAT
BS24487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32581-RB | 852 | CG32581-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG32581-RA | 852 | CG32581-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
| CG8974-RE | 834 | CG8974-PE | 1..736 | 17..752 | 3620 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32581-RB | 1345 | CG32581-RB | 148..1000 | 16..868 | 4265 | 100 | Plus |
| CG32581-RA | 1428 | CG32581-RA | 231..1083 | 16..868 | 4265 | 100 | Plus |
| CG8974-RE | 1317 | CG8974-RE | 103..839 | 16..752 | 3625 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15797667..15798233 | 582..16 | 2835 | 100 | Minus |
| X | 23542271 | X | 15794497..15795063 | 582..16 | 2820 | 99.8 | Minus |
| X | 23542271 | X | 15797437..15797604 | 749..582 | 840 | 100 | Minus |
| X | 23542271 | X | 15794267..15794434 | 749..582 | 795 | 98.2 | Minus |
| X | 23542271 | X | 15797253..15797372 | 868..749 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 15121665..15121843 | 381..559 | 310 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:50:33 has no hits.
BS24487.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 14:32:03 Download gff for
BS24487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32581-RB | 143..992 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:54 Download gff for
BS24487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32581-RA | 232..1081 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:14 Download gff for
BS24487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32581-RA | 232..1081 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:14 Download gff for
BS24487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15797255..15797371 | 750..866 | 100 | <- | Minus |
| X | 15797437..15797603 | 583..749 | 100 | <- | Minus |
| X | 15797667..15798232 | 17..582 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:54 Download gff for
BS24487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15691288..15691404 | 750..866 | 100 | <- | Minus |
| arm_X | 15691470..15691636 | 583..749 | 100 | <- | Minus |
| arm_X | 15691700..15692265 | 17..582 | 100 | | Minus |
BS24487.pep Sequence
Translation from 16 to 867
> BS24487.pep
MEEPKSVSTAELPSTSTGASSSSSTLSNNVSYDKIAWTRDITEPLAEESS
TSQLRPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGG
TDTDTKANEKDKEKEHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLH
QWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQEDPRNKVPPRPAGQR
TEPDPVPGFPGFGFGDGFHMSFGIGAFPFGFITSRLNFFEPRPPADIRRL
HEDEPWALSKLFWHFVVFVIYGLLVPIVHGSSR*
BS24487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32581-PB | 283 | CG32581-PB | 1..283 | 1..283 | 1535 | 100 | Plus |
| CG32581-PA | 283 | CG32581-PA | 1..283 | 1..283 | 1535 | 100 | Plus |
| CG8974-PE | 277 | CG8974-PE | 1..274 | 1..273 | 1330 | 92.7 | Plus |
| CG8974-PD | 277 | CG8974-PD | 1..274 | 1..273 | 1330 | 92.7 | Plus |
| CG8974-PB | 277 | CG8974-PB | 1..274 | 1..273 | 1330 | 92.7 | Plus |
