BS24494.complete Sequence
1580 bp assembled on 2011-02-04
GenBank Submission: KX806549
> BS24494.complete
GAAGTTATCAGTCGACATGGATCGTCTGCGTCGCTCCTTTCGCGATTCCT
TTAGGCGTCGCAAGGATCGCGTTCCCGAATCCTCGAAGCCGCATCAATGG
CAGGCGGACGAGGAGGCCGTGCGATCGGCCACCTGCTCCTTTTCCGTCAA
GTATCTGGGATGTGTCGAGGTCTTTGAATCGCGCGGCATGCAGGTCTGCG
AGGAGGCACTCAAGGTCTTGAGGCAATCCCGTCGTCGTCCTGTCCGCGGA
TTACTTCATGTCAGCGGAGACGGCCTGCGAGTGGTGGACGACGAGACCAA
GGGCCTGATAGTGGACCAGACCATCGAGAAGGTCAGCTTCTGTGCACCGG
ATCGCAATCACGAACGCGGCTTCAGCTACATATGCCGGGATGGAACCACT
CGTCGCTGGATGTGTCACGGCTTCCTGGCGTGCAAGGACTCCGGCGAGCG
ATTGTCCCATGCCGTTGGCTGTGCTTTTGCCGTTTGTCTGGAGCGAAAGC
AGCGACGCGACAAGGAGTGCGGCGTGACAATGACCTTCGACACGAAGAAC
TCGACCTTCACGCGGACCGGATCCTTCCGTCAGCAGACGTTGACGGAGCG
TCTGGCAATGGCCACAGTGGGCACAAATGAGCGGAGCGTAGATGGGCCGG
GATCAGCAATGCCGGGTCCTCCGGCGGCCACCGTCAAGCCTTTCAATCCC
TTCGCCATCGAACGGCCCCATGCCACGCCCAACATGCTGGAGCGTCAGAG
TTCGTTCCGTTTGAGCACGATTGGCAGTCAGTCGCCGTTCAAGCGCCAGA
TGTCACTGCGCATCAACGATCTTCCGTCCAATGCCGATCGTCAGAGGGCC
TTCCTGACCGCCGCCGCTGGCAATCCAATGCAGACGCCACTGCGAAGTGT
TTCTCCCATTGCCGAGGTCTCGCCGGCCAAGTCTGCTGGAGCGGATCCGT
TGTCAGCTGCCGCTGTAGCCGCCGATTCTGTGAGCCAACTGTGTCAGGAG
CTCAGCCAGGGTCTCTCGCTCTTGACCCAGACAGACGCCCTATTAGCCGC
CGGCGAGGATCTAAACTTCAACAACAATCGCAGCATTAATCAGAACATCA
TTGCCGCCGAGAAGCAGGTGCAACATGTACACTCATATGCCCCGCCGACG
GCACAAGTGACGCCTCGAGTGGCCAGCACCACGCCCACATATCAGACGCT
CCATTCGCAGTCGCCCTCGCGATCGGAGCAGAGCATCGAAACCTCGACGG
AACTGCCCAATGCCGAGCAATGGCTGGGTCATGTGGTGCGCAGTACGTCT
CCGGCAGCACCGAAGCGGCCCACTTATTTGGCCAACGTTGGCCGAGCTCA
GACACTGGCCAGTGGCACTGGCGCTGCAGTTGGAGGCGGTGGCCCAGACG
ATCCATTTGACGCCGAGTGGGTGGCCAATGTGGCAGCGGCCAAGCAATTG
TCGCCAGACTTGCCAATCCCGAGCACTGCGCGCTCGCCTCTGGCCAGGCA
CAGCACCAATCCGTTCATCTCACCGCCCAAGGCGCCGGCGCAGTCATTCC
AGGTGCAGCTCTAGAAGCTTTCTAGACCAT
BS24494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| numb-RD | 1671 | CG3779-PD | 124..1671 | 17..1564 | 7740 | 100 | Plus |
| numb-RB | 1548 | CG3779-PB | 1..1548 | 17..1564 | 7740 | 100 | Plus |
| numb-RA | 1671 | CG3779-PA | 124..1671 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| numb-RD | 4395 | CG3779-RD | 942..2489 | 17..1564 | 7740 | 100 | Plus |
| numb-RB | 2956 | CG3779-RB | 564..2111 | 17..1564 | 7740 | 100 | Plus |
| numb-RA | 3309 | CG3779-RA | 917..2464 | 17..1564 | 7740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9460937..9462278 | 223..1564 | 6710 | 100 | Plus |
| 2L | 23513712 | 2L | 9460547..9460753 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:10:04 has no hits.
BS24494.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-04 16:48:39 Download gff for
BS24494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RB | 520..2067 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:01 Download gff for
BS24494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RA | 917..2464 | 17..1564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:11 Download gff for
BS24494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| numb-RA | 917..2464 | 17..1564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:11 Download gff for
BS24494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9460547..9460753 | 17..223 | 100 | -> | Plus |
| 2L | 9460938..9462278 | 224..1564 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:01 Download gff for
BS24494.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9460547..9460753 | 17..223 | 100 | -> | Plus |
| arm_2L | 9460938..9462278 | 224..1564 | 100 | | Plus |
BS24494.pep Sequence
Translation from 16 to 1563
> BS24494.pep
MDRLRRSFRDSFRRRKDRVPESSKPHQWQADEEAVRSATCSFSVKYLGCV
EVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD
QTIEKVSFCAPDRNHERGFSYICRDGTTRRWMCHGFLACKDSGERLSHAV
GCAFAVCLERKQRRDKECGVTMTFDTKNSTFTRTGSFRQQTLTERLAMAT
VGTNERSVDGPGSAMPGPPAATVKPFNPFAIERPHATPNMLERQSSFRLS
TIGSQSPFKRQMSLRINDLPSNADRQRAFLTAAAGNPMQTPLRSVSPIAE
VSPAKSAGADPLSAAAVAADSVSQLCQELSQGLSLLTQTDALLAAGEDLN
FNNNRSINQNIIAAEKQVQHVHSYAPPTAQVTPRVASTTPTYQTLHSQSP
SRSEQSIETSTELPNAEQWLGHVVRSTSPAAPKRPTYLANVGRAQTLASG
TGAAVGGGGPDDPFDAEWVANVAAAKQLSPDLPIPSTARSPLARHSTNPF
ISPPKAPAQSFQVQL*
BS24494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| numb-PD | 556 | CG3779-PD | 42..556 | 1..515 | 2663 | 100 | Plus |
| numb-PB | 515 | CG3779-PB | 1..515 | 1..515 | 2663 | 100 | Plus |
| numb-PA | 556 | CG3779-PA | 42..556 | 1..515 | 2663 | 100 | Plus |
