Clone BS24496 Report

Search the DGRC for BS24496

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:244
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG30423-RE
Protein status:BS24496.pep: full length peptide match
Sequenced Size:413

Clone Sequence Records

BS24496.complete Sequence

413 bp assembled on 2011-02-01

GenBank Submission: KX802408

> BS24496.complete
GAAGTTATCAGTCGACATGGCCACCTTAAAGGCCCTCTTCATCTGCGCCT
TTCTTACATGCATTGGTGTTACCTTCCTGATCCTGGCCTGCGCCGTGCCC
ACGACAAAGATTTTCTATCCCTTCTTCGTTTTGCTGTTCTACGTGCTGTC
AGTTCTTCCAGTCTTCATTGCCAGGAGGACAACTCCTGGAAATGAGACCA
ATCCGAAATCGGAGTTTGCTCACTTCCTTACCGCGGGAATGGTGCTGAGT
GCCTTCGCCCTGCCCATCGTCCTAGCCCACGCATTGGTGATCACCTGGAC
GGCGAGTATCCTGACGATAATAAGTAACATTATTAACTACGGCACCATCT
TCTGGTACGCCATGCGCGATGACGAGCCATACGGATCCATGTTCTAGAAG
CTTTCTAGACCAT

BS24496.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30423-RE 381 CG30423-PE 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30423-RE 655 CG30423-RE 86..467 17..398 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24875338..24875593 289..34 1280 100 Minus
2R 25286936 2R 24875164..24875273 398..289 550 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:57:50 has no hits.

BS24496.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:14 Download gff for BS24496.complete
Subject Subject Range Query Range Percent Splice Strand
CG30423-RC 57..437 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:13 Download gff for BS24496.complete
Subject Subject Range Query Range Percent Splice Strand
CG30423-RD 86..466 17..397 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:08 Download gff for BS24496.complete
Subject Subject Range Query Range Percent Splice Strand
CG30423-RE 86..466 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:08 Download gff for BS24496.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24875165..24875272 290..397 100 <- Minus
2R 24875338..24875593 33..289 99 <- Minus
2R 24875765..24875780 17..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:13 Download gff for BS24496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20762688..20762795 290..397 100 <- Minus
arm_2R 20762861..20763116 33..289 99 <- Minus
arm_2R 20763288..20763303 17..32 100   Minus

BS24496.pep Sequence

Translation from 16 to 396

> BS24496.pep
MATLKALFICAFLTCIGVTFLILACAVPTTKIFYPFFVLLFYVLSVLPVF
IARRTTPGNETNPKSEFAHFLTAGMVLSAFALPIVLAHALVITWTASILT
IISNIINYGTIFWYAMRDDEPYGSMF*

BS24496.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30423-PE 126 CG30423-PE 1..126 1..126 651 100 Plus