BS24496.complete Sequence
413 bp assembled on 2011-02-01
GenBank Submission: KX802408
> BS24496.complete
GAAGTTATCAGTCGACATGGCCACCTTAAAGGCCCTCTTCATCTGCGCCT
TTCTTACATGCATTGGTGTTACCTTCCTGATCCTGGCCTGCGCCGTGCCC
ACGACAAAGATTTTCTATCCCTTCTTCGTTTTGCTGTTCTACGTGCTGTC
AGTTCTTCCAGTCTTCATTGCCAGGAGGACAACTCCTGGAAATGAGACCA
ATCCGAAATCGGAGTTTGCTCACTTCCTTACCGCGGGAATGGTGCTGAGT
GCCTTCGCCCTGCCCATCGTCCTAGCCCACGCATTGGTGATCACCTGGAC
GGCGAGTATCCTGACGATAATAAGTAACATTATTAACTACGGCACCATCT
TCTGGTACGCCATGCGCGATGACGAGCCATACGGATCCATGTTCTAGAAG
CTTTCTAGACCAT
BS24496.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30423-RE | 381 | CG30423-PE | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30423-RE | 655 | CG30423-RE | 86..467 | 17..398 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24875338..24875593 | 289..34 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 24875164..24875273 | 398..289 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:57:50 has no hits.
BS24496.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 16:02:14 Download gff for
BS24496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30423-RC | 57..437 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:42:13 Download gff for
BS24496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30423-RD | 86..466 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:47:08 Download gff for
BS24496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30423-RE | 86..466 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:47:08 Download gff for
BS24496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24875165..24875272 | 290..397 | 100 | <- | Minus |
2R | 24875338..24875593 | 33..289 | 99 | <- | Minus |
2R | 24875765..24875780 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:42:13 Download gff for
BS24496.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20762688..20762795 | 290..397 | 100 | <- | Minus |
arm_2R | 20762861..20763116 | 33..289 | 99 | <- | Minus |
arm_2R | 20763288..20763303 | 17..32 | 100 | | Minus |
BS24496.pep Sequence
Translation from 16 to 396
> BS24496.pep
MATLKALFICAFLTCIGVTFLILACAVPTTKIFYPFFVLLFYVLSVLPVF
IARRTTPGNETNPKSEFAHFLTAGMVLSAFALPIVLAHALVITWTASILT
IISNIINYGTIFWYAMRDDEPYGSMF*
BS24496.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30423-PE | 126 | CG30423-PE | 1..126 | 1..126 | 651 | 100 | Plus |