Clone BS24542 Report

Search the DGRC for BS24542

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptObp99d-RA
Protein status:BS24542.pep: full length peptide match
Sequenced Size:446

Clone Sequence Records

BS24542.complete Sequence

446 bp assembled on 2011-06-17

GenBank Submission: KX805055

> BS24542.complete
GAAGTTATCAGTAGACATGAATCACTTGAGACTGGAGATCATCTGCTGGA
GCTGCCTGCTTATTGCGATGGCTGTTAGCACGGAAGCTGCTTCTGTTTGG
AAACTACCCACCGCGCAGATGGTCTACGAGGATCTAGAGAAGTGTCGCCA
AGAAAGCCAAGAAGAGGATGCTGCTACCCTGAGGTGTTTGGTTAAGAAAC
TGGGTCTTTGGACGGATGAGAGTGGCTACAATGCCAGGCGGATAGCAAAG
ATCTTTGCCGGACACAACCAGATGGAGGAGCTGATGCTGGTGGTGGAGCA
CTGCAACCGGATGGAGCAGGACACGAGCCACCTGGACGACTGGGCCTTCC
TGGCCTACAGGTGCGCCACTTCCGGGCAGTTTGGCCATTGGGTCAAGGAC
TTCATGAGTCAAAAGGAAGTGGAACGATGAAAGCTTTCTAGACCAT

BS24542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99d-RA 414 CG15505-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99d-RA 500 CG15505-RA 35..450 17..432 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29714539..29714954 17..432 2080 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:39:36 has no hits.

BS24542.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:46:51 Download gff for BS24542.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99d-RA 1..413 17..429 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:46 Download gff for BS24542.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99d-RA 28..440 17..429 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:39 Download gff for BS24542.complete
Subject Subject Range Query Range Percent Splice Strand
Obp99d-RA 35..447 17..429 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:39 Download gff for BS24542.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29714539..29714951 17..429 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:46 Download gff for BS24542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25540261..25540673 17..429 100   Plus

BS24542.pep Sequence

Translation from 16 to 429

> BS24542.pep
MNHLRLEIICWSCLLIAMAVSTEAASVWKLPTAQMVYEDLEKCRQESQEE
DAATLRCLVKKLGLWTDESGYNARRIAKIFAGHNQMEELMLVVEHCNRME
QDTSHLDDWAFLAYRCATSGQFGHWVKDFMSQKEVER*

BS24542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Obp99d-PA 137 CG15505-PA 1..137 1..137 734 100 Plus