BS24543.complete Sequence
944 bp assembled on 2011-06-21
GenBank Submission: KX800665
> BS24543.complete
GAAGTTATCAGTCGACATGAGCATCAGCACTTTCAACTTCCAGTTCTACA
ACTACAAGCTTAGCCCGTCCTCACCGGGATTCGGCAGCACAGCCTCCCGT
TCCTCGTCCTCATGCATCAGCGAACTGGAAATGGACATTGATGAGGACAT
GTCCGCCCAGCCCACCATCACCTCCACGCCCAAGCCGCGCTTTACCAGCC
AACTGGCCGTGGAACTGGCCAAAACGGAGCCGGGTAATGGCATATCCCCA
CTGCGACCCAAATTGCATACGGCCCAGAAACGCTGGTCCATGGAGTTGAG
GGAAAAAGTGCTGGAAATGTCCAAGCGAAATAATGGCCAGGAGAAACCAC
AAACCGCACGACAGCAGGAACAGCGACAGCCACAGGAACAGCCACTGCAA
CAGGAGGAACTGCAGCATCAGCAGCAGGAACCCACTGTCACCGACAAAAT
CAACTTCTTCAACAAGCTGACCAACACCTTTGAGTCGGGTTTCAGCAAGC
TGATGCCCCAAGCAAGCTCCACCAACAACCGCTTCATAGCCATGTTGCGC
ACCGCCCGTCCTCAAAACGTTGCCACAACCACCGCCAACAGCAGCACCGC
CAACAGTTTCCTGGGCAGCGACCACAGTCTCAGTGGTTCCGTGACCGGAC
AAGTGCCACCACCCAAGCCCAAGAGACTGTCGGCCACCACCGCCCAGTTT
GCCACTCCCCATGTACCAGCCATGGGCGTGGGCAAGGGGGGCAGCCAGCG
CAAGTGCTCCCTGCGCCGCAAGCCTTCGATGGACAAGTCGAGGGCCACCA
TCTCCCGCCAGAGTTCCAGTGCCTCAGTACGAACCCAGAACCACGCCATC
ATGGAGGACCTCAGTCTAGTGGTTCCCGTGAGATTGCGCATCGCGGAGTA
CGAGCAGCGCATCTCGATGAGTGCTTAGAAGCTTTCTAGACCAT
BS24543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnk-RA | 912 | CG1480-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnk-RA | 1028 | CG1480-RA | 18..935 | 11..928 | 4575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31193379..31194296 | 11..928 | 4575 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-26 15:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2549 | 352..596 | 227 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6893 | 322..431 | 187 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2515 | 338..479 | 172 | 58.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2616 | 322..535 | 157 | 57 | Plus |
BS24543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 16:44:38 Download gff for
BS24543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnk-RA | 162..1073 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:48 Download gff for
BS24543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnk-RA | 24..935 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:57 Download gff for
BS24543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnk-RA | 24..935 | 17..928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:57 Download gff for
BS24543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31193385..31194296 | 17..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:48 Download gff for
BS24543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27019107..27020018 | 17..928 | 100 | | Plus |
BS24543.pep Sequence
Translation from 16 to 927
> BS24543.pep
MSISTFNFQFYNYKLSPSSPGFGSTASRSSSSCISELEMDIDEDMSAQPT
ITSTPKPRFTSQLAVELAKTEPGNGISPLRPKLHTAQKRWSMELREKVLE
MSKRNNGQEKPQTARQQEQRQPQEQPLQQEELQHQQQEPTVTDKINFFNK
LTNTFESGFSKLMPQASSTNNRFIAMLRTARPQNVATTTANSSTANSFLG
SDHSLSGSVTGQVPPPKPKRLSATTAQFATPHVPAMGVGKGGSQRKCSLR
RKPSMDKSRATISRQSSSASVRTQNHAIMEDLSLVVPVRLRIAEYEQRIS
MSA*
BS24543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnk-PA | 303 | CG1480-PA | 1..303 | 1..303 | 1534 | 100 | Plus |