Clone BS24543 Report

Search the DGRC for BS24543

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptbnk-RA
Protein status:BS24543.pep: full length peptide match
Sequenced Size:944

Clone Sequence Records

BS24543.complete Sequence

944 bp assembled on 2011-06-21

GenBank Submission: KX800665

> BS24543.complete
GAAGTTATCAGTCGACATGAGCATCAGCACTTTCAACTTCCAGTTCTACA
ACTACAAGCTTAGCCCGTCCTCACCGGGATTCGGCAGCACAGCCTCCCGT
TCCTCGTCCTCATGCATCAGCGAACTGGAAATGGACATTGATGAGGACAT
GTCCGCCCAGCCCACCATCACCTCCACGCCCAAGCCGCGCTTTACCAGCC
AACTGGCCGTGGAACTGGCCAAAACGGAGCCGGGTAATGGCATATCCCCA
CTGCGACCCAAATTGCATACGGCCCAGAAACGCTGGTCCATGGAGTTGAG
GGAAAAAGTGCTGGAAATGTCCAAGCGAAATAATGGCCAGGAGAAACCAC
AAACCGCACGACAGCAGGAACAGCGACAGCCACAGGAACAGCCACTGCAA
CAGGAGGAACTGCAGCATCAGCAGCAGGAACCCACTGTCACCGACAAAAT
CAACTTCTTCAACAAGCTGACCAACACCTTTGAGTCGGGTTTCAGCAAGC
TGATGCCCCAAGCAAGCTCCACCAACAACCGCTTCATAGCCATGTTGCGC
ACCGCCCGTCCTCAAAACGTTGCCACAACCACCGCCAACAGCAGCACCGC
CAACAGTTTCCTGGGCAGCGACCACAGTCTCAGTGGTTCCGTGACCGGAC
AAGTGCCACCACCCAAGCCCAAGAGACTGTCGGCCACCACCGCCCAGTTT
GCCACTCCCCATGTACCAGCCATGGGCGTGGGCAAGGGGGGCAGCCAGCG
CAAGTGCTCCCTGCGCCGCAAGCCTTCGATGGACAAGTCGAGGGCCACCA
TCTCCCGCCAGAGTTCCAGTGCCTCAGTACGAACCCAGAACCACGCCATC
ATGGAGGACCTCAGTCTAGTGGTTCCCGTGAGATTGCGCATCGCGGAGTA
CGAGCAGCGCATCTCGATGAGTGCTTAGAAGCTTTCTAGACCAT

BS24543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
bnk-RA 912 CG1480-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
bnk-RA 1028 CG1480-RA 18..935 11..928 4575 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31193379..31194296 11..928 4575 99.9 Plus
Blast to na_te.dros performed 2014-11-26 15:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2549 352..596 227 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6785..6893 322..431 187 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2373..2515 338..479 172 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2616 322..535 157 57 Plus

BS24543.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 16:44:38 Download gff for BS24543.complete
Subject Subject Range Query Range Percent Splice Strand
bnk-RA 162..1073 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:48 Download gff for BS24543.complete
Subject Subject Range Query Range Percent Splice Strand
bnk-RA 24..935 17..928 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:57 Download gff for BS24543.complete
Subject Subject Range Query Range Percent Splice Strand
bnk-RA 24..935 17..928 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:57 Download gff for BS24543.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31193385..31194296 17..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:48 Download gff for BS24543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27019107..27020018 17..928 100   Plus

BS24543.pep Sequence

Translation from 16 to 927

> BS24543.pep
MSISTFNFQFYNYKLSPSSPGFGSTASRSSSSCISELEMDIDEDMSAQPT
ITSTPKPRFTSQLAVELAKTEPGNGISPLRPKLHTAQKRWSMELREKVLE
MSKRNNGQEKPQTARQQEQRQPQEQPLQQEELQHQQQEPTVTDKINFFNK
LTNTFESGFSKLMPQASSTNNRFIAMLRTARPQNVATTTANSSTANSFLG
SDHSLSGSVTGQVPPPKPKRLSATTAQFATPHVPAMGVGKGGSQRKCSLR
RKPSMDKSRATISRQSSSASVRTQNHAIMEDLSLVVPVRLRIAEYEQRIS
MSA*

BS24543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
bnk-PA 303 CG1480-PA 1..303 1..303 1534 100 Plus