BS24544.complete Sequence
722 bp assembled on 2011-06-17
GenBank Submission: KX800448
> BS24544.complete
GAAGTTATCAGTCGACATGCGTTTCCTCATCGCTTTCTGCCTGATTGGTG
CCGCATGCGCCCAGTACAACTACGGAGCGGGATTTACCGGAGCCGCCTCC
GATAATGTTCCCAGTTACTCCGGAAGCAGTGTTGGCGACTCCTACGATGG
TGCTGCCAGCAGCCCGGACTACTCGGTCTCCAGCGAACTGAACAAGGAGT
ACTACACCTTCGAGGCTGACGAGAGCCAGTTCGAGGATCCTCTGGCCGCC
CAGAAGATCGCCGGCTCCGTGAACAAGGGACTCCGCGTGGTCTTCATCAA
GGGACCCGAAAACCGTGGCCTGGAGAACGCTGCTCTGGCCCTCGCCAAGC
AGGCTGCCGAGCAGAGGACCGCCATCTATGTCTTGAACAAGCAGACCGAC
ATTGGAGATCTGGCCCAGAAATTCAATGCCGCCCGCCAGAACTCCAACCA
GCGTCCTGAGGTGCACTTCGTCAAGTACAGGACTCCCGAGGATGCGGCCA
ATGCCCAGCGTGCCATCCAGTCGCAGTACGATAACCTGGGAGGATCCAGC
CAGTCCATCAACGGAGGAGTTGCCAACGCCATCAACTTCGCCTCCGCTGC
CCCCGTGGTTCCCGCTCGTCGTGGCCCCAACTACTCCCCACCAGCCGCCG
CCACGAGCAACTCCTACCTGCCCGCCAACATCCTGCGTCGCCTGCGCATC
CGTTAAAAGCTTTCTAGACCAT
BS24544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlO-RA | 690 | CG6452-PA | 1..690 | 17..706 | 3450 | 100 | Plus |
| TwdlN-RA | 930 | CG5476-PA | 505..852 | 260..607 | 975 | 85.3 | Plus |
| TwdlL-RA | 858 | CG6447-PA | 448..788 | 266..606 | 880 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlO-RA | 807 | CG6452-RA | 41..731 | 16..706 | 3455 | 100 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 567..914 | 260..607 | 975 | 85.3 | Plus |
| TwdlL-RA | 1002 | CG6447-RA | 498..838 | 266..606 | 880 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26626008..26626698 | 706..16 | 3455 | 100 | Minus |
| 3R | 32079331 | 3R | 26632435..26632782 | 260..607 | 975 | 85.3 | Plus |
| 3R | 32079331 | 3R | 26624751..26625091 | 606..266 | 880 | 83.9 | Minus |
| 3R | 32079331 | 3R | 26619707..26620044 | 270..607 | 820 | 82.8 | Plus |
| 3R | 32079331 | 3R | 26622641..26622981 | 606..266 | 820 | 82.7 | Minus |
| 3R | 32079331 | 3R | 26628051..26628379 | 595..267 | 730 | 81.5 | Minus |
| 3R | 32079331 | 3R | 26630293..26630572 | 267..546 | 710 | 83.6 | Plus |
| 3R | 32079331 | 3R | 26620752..26621063 | 595..284 | 645 | 80.4 | Minus |
| 3R | 32079331 | 3R | 26634164..26634450 | 261..547 | 520 | 78.7 | Plus |
| 3R | 32079331 | 3R | 26656944..26657057 | 281..394 | 285 | 83.3 | Plus |
| 3R | 32079331 | 3R | 26640644..26640706 | 458..520 | 210 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:39:41 has no hits.
BS24544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:46:52 Download gff for
BS24544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlO-RA | 1..688 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:48 Download gff for
BS24544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlO-RA | 42..729 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:40 Download gff for
BS24544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlO-RA | 42..729 | 17..704 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:40 Download gff for
BS24544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26626010..26626697 | 17..704 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:48 Download gff for
BS24544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22451732..22452419 | 17..704 | 100 | | Minus |
BS24544.pep Sequence
Translation from 16 to 705
> BS24544.pep
MRFLIAFCLIGAACAQYNYGAGFTGAASDNVPSYSGSSVGDSYDGAASSP
DYSVSSELNKEYYTFEADESQFEDPLAAQKIAGSVNKGLRVVFIKGPENR
GLENAALALAKQAAEQRTAIYVLNKQTDIGDLAQKFNAARQNSNQRPEVH
FVKYRTPEDAANAQRAIQSQYDNLGGSSQSINGGVANAINFASAAPVVPA
RRGPNYSPPAAATSNSYLPANILRRLRIR*
BS24544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlO-PA | 229 | CG6452-PA | 1..229 | 1..229 | 1162 | 100 | Plus |
| TwdlN-PA | 309 | CG5476-PA | 106..308 | 20..229 | 643 | 63.8 | Plus |
| TwdlK-PA | 247 | CG6460-PA | 1..247 | 1..228 | 619 | 53.9 | Plus |
| TwdlP-PA | 220 | CG14240-PA | 1..219 | 1..227 | 612 | 60 | Plus |
| TwdlJ-PB | 274 | CG5471-PB | 3..273 | 2..227 | 610 | 52.4 | Plus |
