BS24549.complete Sequence
557 bp assembled on 2011-06-17
GenBank Submission: KX805958
> BS24549.complete
GAAGTTATCAGTCGACATGGATTCAGATGCCGATGGTGGCGAGACCGTTT
CGAATTTCTCTGAAAATTCGACGGATTTTGAAGAAACTGAGGAGTATATT
GTAGAGAGGATTTTGGATCGAAGGCATTATATGGGCCAATTACAATACTT
GGTCAAATGGCTGGATTATAGCGATGAAGATAATACCTGGGAATCGGCAG
CAGATCTCGATTGCCATTCACTTATTGATTCGATTGAATCACAAAAAAGT
CTGAAGAGGGGTCAAGAGCTGAATAATCAATATGAAACTAAAGCTAAACG
ACTGAAAATCGATCCATGTCTAGTAGTAGATAGTCCTTTTAATCATGGTT
TCACTGCACAAGAGATTCTAAAAGGCGCTAAAAACAATGGTGAAATATCG
TTTTTAATTAGGTTTTGGCATCTCGATCAACCACAAGTGGTGCCAAGTGG
AATTGCATATGTGGAAATACCGCAGATGGTTCTGAAATTCTATGAAAATC
ATTGCAATTTTCACGATTATTTAAATAATTATATATCATGAAAGCTTTCT
AGACCAT
BS24549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1e-RA | 525 | CG8120-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1e-RA | 592 | CG8120-RA | 57..581 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9321826..9322350 | 17..541 | 2625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:40:01 has no hits.
BS24549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:46:55 Download gff for
BS24549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1e-RA | 57..580 | 17..540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:56 Download gff for
BS24549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1e-RA | 57..580 | 17..540 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:47 Download gff for
BS24549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HP1e-RA | 57..580 | 17..540 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:47 Download gff for
BS24549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9321826..9322349 | 17..540 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:56 Download gff for
BS24549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5147548..5148071 | 17..540 | 100 | | Plus |
BS24549.pep Sequence
Translation from 16 to 540
> BS24549.pep
MDSDADGGETVSNFSENSTDFEETEEYIVERILDRRHYMGQLQYLVKWLD
YSDEDNTWESAADLDCHSLIDSIESQKSLKRGQELNNQYETKAKRLKIDP
CLVVDSPFNHGFTAQEILKGAKNNGEISFLIRFWHLDQPQVVPSGIAYVE
IPQMVLKFYENHCNFHDYLNNYIS*
BS24549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HP1e-PA | 174 | CG8120-PA | 1..174 | 1..174 | 933 | 100 | Plus |
| Su(var)205-PB | 206 | CG8409-PB | 19..201 | 22..166 | 239 | 31.1 | Plus |
| Su(var)205-PA | 206 | CG8409-PA | 19..201 | 22..166 | 239 | 31.1 | Plus |
| HP1b-PB | 240 | CG7041-PB | 3..153 | 26..166 | 198 | 32.9 | Plus |
| HP1b-PC | 240 | CG7041-PC | 3..153 | 26..166 | 198 | 32.9 | Plus |
