Clone BS24552 Report

Search the DGRC for BS24552

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:52
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-k-RA
Protein status:BS24552.pep: full length peptide match
Sequenced Size:1061

Clone Sequence Records

BS24552.complete Sequence

1061 bp assembled on 2011-06-21

GenBank Submission: KX804629

> BS24552.complete
GAAGTTATCAGTCGACATGGTCACACATGGTGTCCTCGGCTTGGGATTTC
TCATTGTTGGTCTAATTCTGGCCACGGACGCCTGGCTGTTATCCGAATCT
GGTTTAAACGAATCCAGCTACAAAGTCCGTCATCTATCGATGCACTTTTC
GCGAGTGTTTCTCAGCGTAAATGTAGAAAGCAACGATGCGCCCACTTTGA
TCGAGGCGCAATGGCCGGTTTCCTATTTTCCCATGCCCACTGTCGTCTTT
CCCCACATCGATGTTCATTCCATGGGGGATCATGATGATTGCTCTCTGGT
ACAACAGGCACACTGGTCCCAGGTGGATGCACTGAGTCGACTGTGGGTCA
TGGACATCGGATTTCCCGGCAGCACGTGCTCACCCCGTTTGTTTGTCTTC
GATCTGATGCGTAACAACGCGGAGCTATTGAGAATCGATTGTGGACACCA
TATAGGTGCTAATGACACCCACTTTCTGACTGTCCAAATGGGACCCAAGA
GTCCGGGATGCGAGCACGAGCGCCATATTTACTTCATCCTTGGAAAGGTA
CCAGAAATTCTAGCCTACGACATCCTGGAGCAGACGTGGCACCGCCTATC
CTTGGAGAGCAATAAGTACGAGAATATGAATCAATCGTTTCCCATCAAGC
CAGTGGATTTCATCTTCGGAATTCAAGGGGAACTCATACTCTCCGACCAG
GATGGTGATCTATACAGTACGGTGGACAGACTGGAAATTGAAGGCAAAAG
CGAATTAGCAAGCAAACCAATTAACAATAGCATTAAACTCACACATTTGG
GCAGTCTTCTGGGCAGCAGTCGCAGCATGATCATCGACAATTTCGGAACA
TTGTACTATGTTATCCCCAAATTCGGAGCTGTCGTACGATGTGCCAAACT
AGCCAACATCACAGCCGAGGGCAACGAAATCATATATATCACATCGAAGA
ACATTCAGCAGATTTTCTTCACCTCCAATGATGCATTATGGGTCCTAAGT
GATCGGGTCTTGAATGCGAAGGACATGTGCTTTCCTAGCTTATAAAAGCT
TTCTAGACCAT

BS24552.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-RA 1029 CG7463-PA 1..1029 17..1045 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-RA 1034 CG7463-RA 1..1029 17..1045 5145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15520620..15521648 17..1045 5145 100 Plus
Blast to na_te.dros performed 2014-11-26 15:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT5 669 Dbuz\BuT5 BUT5 669bp 563..617 675..621 113 67.3 Minus

BS24552.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 17:07:42 Download gff for BS24552.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1027 17..1043 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:31 Download gff for BS24552.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1027 17..1043 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:55 Download gff for BS24552.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1027 17..1043 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:55 Download gff for BS24552.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520620..15521646 17..1043 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:31 Download gff for BS24552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15513720..15514746 17..1043 100   Plus

BS24552.pep Sequence

Translation from 16 to 1044

> BS24552.pep
MVTHGVLGLGFLIVGLILATDAWLLSESGLNESSYKVRHLSMHFSRVFLS
VNVESNDAPTLIEAQWPVSYFPMPTVVFPHIDVHSMGDHDDCSLVQQAHW
SQVDALSRLWVMDIGFPGSTCSPRLFVFDLMRNNAELLRIDCGHHIGAND
THFLTVQMGPKSPGCEHERHIYFILGKVPEILAYDILEQTWHRLSLESNK
YENMNQSFPIKPVDFIFGIQGELILSDQDGDLYSTVDRLEIEGKSELASK
PINNSIKLTHLGSLLGSSRSMIIDNFGTLYYVIPKFGAVVRCAKLANITA
EGNEIIYITSKNIQQIFFTSNDALWVLSDRVLNAKDMCFPSL*

BS24552.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-PA 342 CG7463-PA 1..342 1..342 1800 100 Plus