Clone BS24554 Report

Search the DGRC for BS24554

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptRab9Db-RA
Protein status:BS24554.pep: full length peptide match
Sequenced Size:626

Clone Sequence Records

BS24554.complete Sequence

626 bp assembled on 2011-06-17

GenBank Submission: KX803212

> BS24554.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCA
TCCTGGGTGACAGTGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCGAAAGACACCGGGTCACGGTGGGCATGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTAC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGAAGAGTC
ACTGGATTAAAAGCTTTCTAGACCAT

BS24554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-RA 594 CG9807-PA 1..594 17..610 2955 99.8 Plus
Rab9Fa-RA 594 CG32671-PA 1..594 17..610 2820 98.3 Plus
Rab9D-RA 594 CG32678-PA 1..594 17..610 2805 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-RA 871 CG9807-RA 68..661 17..610 2955 99.8 Plus
Rab9Fa-RA 871 CG32671-RA 68..661 17..610 2820 98.3 Plus
Rab9D-RA 897 CG32678-RA 94..687 17..610 2805 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10622565..10623158 610..17 2955 99.8 Minus
X 23542271 X 10950370..10950963 610..17 2820 98.3 Minus
X 23542271 X 10589182..10589775 17..610 2805 98.1 Plus
X 23542271 X 10661165..10661758 610..17 2790 98 Minus
X 23542271 X 10417496..10418083 17..610 1665 86.4 Plus
X 23542271 X 10951938..10952419 504..17 1115 82.4 Minus
Blast to na_te.dros performed on 2014-11-26 14:40:12 has no hits.

BS24554.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:46:56 Download gff for BS24554.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..659 17..608 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:00 Download gff for BS24554.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..659 17..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:50 Download gff for BS24554.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..659 17..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:50 Download gff for BS24554.complete
Subject Subject Range Query Range Percent Splice Strand
X 10622567..10623158 17..608 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:00 Download gff for BS24554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10516600..10517191 17..608 99   Minus

BS24554.pep Sequence

Translation from 16 to 609

> BS24554.pep
MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAEESLD*

BS24554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1047 100 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..197 1018 97 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1017 97.5 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1015 97 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 694 72.2 Plus