Clone BS24556 Report

Search the DGRC for BS24556

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptSfp65A-RA
Protein status:BS24556.pep: full length peptide match
Sequenced Size:458

Clone Sequence Records

BS24556.complete Sequence

458 bp assembled on 2011-06-17

GenBank Submission: KX805150

> BS24556.complete
GAAGTTATCAGTCGACATGGTTTGGATACTGCGACTATTGTCTATCCTTT
GCGCCAGCGTTTTAGCTTATCAGAAAGATGACAGTGCCAATAGCATTATA
CTTAACGATGGAGCTATAACGGTAAACACCTCCACATCGGGACTTACGGA
AGCGGAGGGAAATACGTATGTACCAGGACCTGGATTCTTTCAAGAGACTT
TCCTTGGCAAAAAAACGATTGGTTCATCTCCTCGATTGCCAGATCTAGGA
AATAATATCGTCGTTATGAGCGAAAGTAAGCAATTGAAGGCCGGTGAAAA
AAACATTGTTAACTCCAAAGTGCAAACGGTTACAAGAAAGCCCAAAATGT
CAAAAGCAGATATATTTCATGGTATAAAATTATTTCAAGGACCTATTCAT
GAGCAGTTTGAAAACGATCTCCATGACCATCATCACGATTAAAAGCTTTC
TAGACCAT

BS24556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp65A-RA 426 CG42479-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp65A-RA 554 CG42479-RA 35..462 17..444 2140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6350310..6350737 17..444 2140 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:40:22 has no hits.

BS24556.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:46:57 Download gff for BS24556.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp65A-RA 35..458 17..440 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:04 Download gff for BS24556.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp65A-RA 35..458 17..440 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:54 Download gff for BS24556.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp65A-RA 35..458 17..440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:54 Download gff for BS24556.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6350310..6350733 17..440 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:04 Download gff for BS24556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6343410..6343833 17..440 100   Plus

BS24556.pep Sequence

Translation from 16 to 441

> BS24556.pep
MVWILRLLSILCASVLAYQKDDSANSIILNDGAITVNTSTSGLTEAEGNT
YVPGPGFFQETFLGKKTIGSSPRLPDLGNNIVVMSESKQLKAGEKNIVNS
KVQTVTRKPKMSKADIFHGIKLFQGPIHEQFENDLHDHHHD*

BS24556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp65A-PA 141 CG42479-PA 1..141 1..141 731 100 Plus