Clone BS24562 Report

Search the DGRC for BS24562

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptGr94a-RA
Protein status:BS24562.pep: full length peptide match
Sequenced Size:1247

Clone Sequence Records

BS24562.complete Sequence

1247 bp assembled on 2011-06-17

GenBank Submission: KX802928

> BS24562.complete
GAAGTTATCAGTCGACATGGACTTCACCAGCGACTACGCGCATCGGCGTA
TGGTGAAATTTCTGACGATCATACTGATAGGCTTTATGACCGTCTTCGGA
CTCCTGGCCAATCGATATCGGGCGGGCCGTCGTGAAAGATTCCGCTTCTC
AAAGGCAAATCTGGCCTTTGCTTCGCTGTGGGCAATTGCATTCAGCTTGG
TTTACGGGCGGCAAATCTACAAGGAGTACCAGGAGGGTCAGATCAACCTG
AAGGACGCCACCACTCTGTACAGCTATATGAACATTACGGTGGCTGTTAT
TAACTATGTGTCGCAAATGATAATCAGTGACCATGTGGCCAAGGTGTTGA
GCAAAGTGCCCTTCTTTGATACCCTAAAAGAATTCCGTCTGGACAGCAGG
TCGCTGTACATATCCATCGTTTTGGCTCTGGTCAAGACCGTGGCTTTTCC
TCTAACAATTGAAGTGGCTTTCATACTGCAACAGAGGCGGCAGCATCCCG
AGATGAGCTTGATCTGGACCTTGTACCGGCTGTTTCCCTTAATTATTTCG
AATTTTCTCAATAACTGCTACTTTGGCGCAATGGTGGTGGTGAAGGAGAT
TCTGTACGCTCTGAACAGACGGCTGGAAGCGCAGCTGCAGGAGGTGAATC
TGCTGCAGAGGAAGGACCAGCTAAAGTTGTACACTAAATACTACCGCATG
CAGCGATTTTGCGCCTTGGCGGATGAACTCGACCAGCTGGCGTATCGCTA
TAGGTTGATATATGTGCATTCGGGAAAGTATCTGACCCCAATGTCCTTGT
CCATGATTCTGTCGCTCATATGCCACCTGCTCGGAATAACGGTGGGTTTC
TACAGTCTGTACTATGCCATAGCGGACACCTTAATCATGGGCAAGCCGTA
CGATGGTCTTGGATCGCTGATCAATCTGGTTTTCCTCTCCATCTCGCTGG
CGGAGATCACATTGCTCACGCATTTGTGCAACCACCTATTGGTGGCCACC
CGAAGATCGGCAGTCATTCTCCAGGAGATGAATCTCCAGCATGCGGACAG
CCGCTACCGTCAGGCAGTCCACGGCTTTACTCTGCTGGTCACGGTGACCA
AGTACCAAATTAAACCCTTGGGCTTGTACGAGCTGGACATGCGACTGATC
AGCAATGTCTTCTCGGCGGTGGCCAGCTTCCTGCTGATCCTCGTGCAGGC
CGATCTGTCCCAGCGCTTCAAGATGCAATAGAAGCTTTCTAGACCAT

BS24562.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Gr94a-RA 1215 CG31280-PA 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Gr94a-RA 1215 CG31280-RA 1..1215 17..1231 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23051689..23052903 17..1231 6075 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:40:37 has no hits.

BS24562.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:00 Download gff for BS24562.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 17..1231 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:12 Download gff for BS24562.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 17..1231 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:01 Download gff for BS24562.complete
Subject Subject Range Query Range Percent Splice Strand
Gr94a-RA 1..1215 17..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:01 Download gff for BS24562.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23051689..23052903 17..1231 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:12 Download gff for BS24562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18877411..18878625 17..1231 100   Plus

BS24562.pep Sequence

Translation from 16 to 1230

> BS24562.pep
MDFTSDYAHRRMVKFLTIILIGFMTVFGLLANRYRAGRRERFRFSKANLA
FASLWAIAFSLVYGRQIYKEYQEGQINLKDATTLYSYMNITVAVINYVSQ
MIISDHVAKVLSKVPFFDTLKEFRLDSRSLYISIVLALVKTVAFPLTIEV
AFILQQRRQHPEMSLIWTLYRLFPLIISNFLNNCYFGAMVVVKEILYALN
RRLEAQLQEVNLLQRKDQLKLYTKYYRMQRFCALADELDQLAYRYRLIYV
HSGKYLTPMSLSMILSLICHLLGITVGFYSLYYAIADTLIMGKPYDGLGS
LINLVFLSISLAEITLLTHLCNHLLVATRRSAVILQEMNLQHADSRYRQA
VHGFTLLVTVTKYQIKPLGLYELDMRLISNVFSAVASFLLILVQADLSQR
FKMQ*

BS24562.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Gr94a-PA 404 CG31280-PA 1..404 1..404 2026 100 Plus
Gr97a-PB 425 CG33083-PB 29..425 9..404 699 37.4 Plus
Gr97a-PA 423 CG33083-PA 29..423 9..404 683 37.2 Plus
Gr93a-PA 419 CG13417-PA 67..409 49..402 180 21.8 Plus