Clone BS24567 Report

Search the DGRC for BS24567

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:245
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptSfp53D-RA
Protein status:BS24567.pep: full length peptide match
Sequenced Size:512

Clone Sequence Records

BS24567.complete Sequence

512 bp assembled on 2011-06-17

GenBank Submission: KX802141

> BS24567.complete
GAAGTTATCAGTCGACATGAAAGTTATTATTTTGCTGGCTCTCTTCAGCC
AGATTATCCTGGAAATTGTTGCCTATGAGCATAAAATCGCTCACAGGAAA
TGTGGCGAGAACACTTTCCCAGATTGTTATTCATATTGTAACAAAGGATG
CAAGGATAACCCAGTCGACTGCATTCATTACTGCGAGAAAGGATGTGGAT
GCATCGAAGGCTCAATAGTGAGAAACAATGGAGGATGCCGAAGAATAAAG
ATTTGCGACAAGGATGATGATTCCCTATCCGTTGAAAATAACGAGTTGGC
TGAAAAATACGTAACATCTTATTGGGAGGACCCGGTAAATAGTAATGAAA
ATGAAAATCAAGCCCAAACGTTAGATGGTTTGGATGAAAACAAATCGGGT
GAGATAAAAAGCATGGAACAGCCGAATGAAGTGCCGCCGGAGAGTCCTTC
GGAGGATGCTCCCAATGATCCCAAGCCACCAGTAGATGCAGTGTAAAAGC
TTTCTAGACCAT

BS24567.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp53D-RB 480 CG42477-PB 1..480 17..496 2400 100 Plus
Sfp53D-RA 480 CG42477-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp53D-RB 820 CG42477-RB 30..510 17..497 2405 100 Plus
Sfp53D-RA 577 CG42477-RA 30..510 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16744605..16745085 497..17 2405 100 Minus
Blast to na_te.dros performed 2014-11-26 14:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 1194..1225 338..369 106 81.2 Plus

BS24567.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:02 Download gff for BS24567.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp53D-RA 20..497 17..494 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:16 Download gff for BS24567.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp53D-RA 20..497 17..494 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:04 Download gff for BS24567.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp53D-RA 30..507 17..494 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:04 Download gff for BS24567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16744608..16745085 17..494 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:16 Download gff for BS24567.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12632113..12632590 17..494 100   Minus

BS24567.pep Sequence

Translation from 16 to 495

> BS24567.pep
MKVIILLALFSQIILEIVAYEHKIAHRKCGENTFPDCYSYCNKGCKDNPV
DCIHYCEKGCGCIEGSIVRNNGGCRRIKICDKDDDSLSVENNELAEKYVT
SYWEDPVNSNENENQAQTLDGLDENKSGEIKSMEQPNEVPPESPSEDAPN
DPKPPVDAV*

BS24567.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp53D-PB 159 CG42477-PB 1..159 1..159 874 100 Plus
Sfp53D-PA 159 CG42477-PA 1..159 1..159 874 100 Plus