BS24576.complete Sequence
416 bp assembled on 2011-06-17
GenBank Submission: KX804800
> BS24576.complete
GAAGTTATCAGTCGACATGATGTCGTTCGGCAAGATTGTGGTATTCCTGG
TCCTAGTCCTAGTTCAACTAATCCATTGTACGCGCTTTACTGCGCCATCT
TTGGACAGGACCATCTACTACCGGAATACGCCACCCGATCCCTTCGGTCA
CTACAGCTTCGAGTTCCAGACCACCAACGGCATTACCACCAAGGGAGCTG
GTAATGAGAACGGAGCCGTCGGAGTGGTTCAGTTCGTTTCTCCCGAGGGT
ATACCCGTTACCTTCTCGTACGTGGCCGATGCCAATGGATATCAGCCCAC
CGGAGATCACATTCCCGCCATCCCGCTGCACGTTATCCGCCAGTTGGAGT
ACATCCGCACGCATCCACCGGTGGATGAGATTCGGTCCAGACGTTGGTAA
AAGCTTTCTAGACCAT
BS24576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Ca-RA | 384 | CG11310-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Ca-RA | 876 | CG11310-RA | 134..519 | 17..402 | 1930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21292217..21292586 | 402..33 | 1850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:27 has no hits.
BS24576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:05 Download gff for
BS24576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Ca-RA | 1..382 | 17..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:32 Download gff for
BS24576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Ca-RA | 134..515 | 17..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:19 Download gff for
BS24576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr78Ca-RA | 134..515 | 17..398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:19 Download gff for
BS24576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21292221..21292584 | 35..398 | 100 | <- | Minus |
| 3L | 21292650..21292667 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:32 Download gff for
BS24576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21285750..21285767 | 17..34 | 100 | | Minus |
| arm_3L | 21285321..21285684 | 35..398 | 100 | <- | Minus |
BS24576.pep Sequence
Translation from 16 to 399
> BS24576.pep
MMSFGKIVVFLVLVLVQLIHCTRFTAPSLDRTIYYRNTPPDPFGHYSFEF
QTTNGITTKGAGNENGAVGVVQFVSPEGIPVTFSYVADANGYQPTGDHIP
AIPLHVIRQLEYIRTHPPVDEIRSRRW*
BS24576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr78Ca-PA | 127 | CG11310-PA | 1..127 | 1..127 | 680 | 100 | Plus |
| Edg78E-PB | 122 | CG7673-PB | 28..114 | 35..118 | 239 | 49.4 | Plus |
| Edg78E-PA | 122 | CG7673-PA | 28..114 | 35..118 | 239 | 49.4 | Plus |
| Cpr78Cc-PA | 119 | CG7658-PA | 35..117 | 39..118 | 237 | 50.6 | Plus |
| Cpr67Fa2-PA | 134 | CG18349-PA | 38..126 | 42..126 | 187 | 47.2 | Plus |
