BS24580.complete Sequence
428 bp assembled on 2011-06-17
GenBank Submission: KX805023
> BS24580.complete
GAAGTTATCAGTCGACATGTGCAAGATCCTTCCTCTTTTCGTCCTGGCGG
TCATGGTGGCCTGTGGTCAAGCTCTTCCCGTAGATCCCGAACGTGAACCC
GTGGCTATCCTGAAGTCCGAGATCATCAAGACAGAGGAGGGCTACACCAG
CGCCTACGTGGGAGCAGATGGTATATCTCGCAACGAGGAGGCTTTTTTGG
TGGACAAGGGTACCGACGAGGAGGCTCTGGAGGTGAAGGGATCCTACAAG
TACATAAACGAAGACGGCCAGGAGGTGGAGGTGTTCTATACGGCGGGAAA
GAACGGATTTGTTCCCTACGGCAGCATTATCAATCCGGAAATCACGGCCG
TTGCCGAAGCAGCCAAGGATCTGCCAAAGGTGGAGAAGGTGGAGAAGGCG
GGTAGGCCTTAGAAGCTTTCTAGACCAT
BS24580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ec-RA | 396 | CG9077-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ec-RA | 744 | CG9077-RA | 138..535 | 17..414 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11259315..11259700 | 414..29 | 1930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:42 has no hits.
BS24580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:06 Download gff for
BS24580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ec-RA | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:38 Download gff for
BS24580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ec-RA | 138..533 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:24 Download gff for
BS24580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr47Ec-RA | 138..533 | 17..412 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:24 Download gff for
BS24580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11259317..11259700 | 29..412 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:38 Download gff for
BS24580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7146822..7147205 | 29..412 | 100 | <- | Minus |
BS24580.pep Sequence
Translation from 16 to 411
> BS24580.pep
MCKILPLFVLAVMVACGQALPVDPEREPVAILKSEIIKTEEGYTSAYVGA
DGISRNEEAFLVDKGTDEEALEVKGSYKYINEDGQEVEVFYTAGKNGFVP
YGSIINPEITAVAEAAKDLPKVEKVEKAGRP*
BS24580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr47Ec-PA | 131 | CG9077-PA | 1..131 | 1..131 | 666 | 100 | Plus |
| Cpr47Eb-PA | 214 | CG13224-PA | 8..135 | 4..130 | 240 | 43.8 | Plus |
| Cpr78E-PA | 137 | CG7160-PA | 1..122 | 1..118 | 210 | 42.3 | Plus |
| Lcp65Ad-PB | 108 | CG6955-PB | 12..101 | 13..103 | 162 | 39.6 | Plus |
| Lcp65Ad-PA | 108 | CG6955-PA | 12..101 | 13..103 | 162 | 39.6 | Plus |
