BS24582.complete Sequence
791 bp assembled on 2011-06-17
GenBank Submission: KX801335
> BS24582.complete
GAAGTTATCAGTCGACATGCGAGGATTTCTGTTACTCTTACTCATTGCTT
CCGTTTCGGCAGCAAAATTGGGCTACAATTACCAAGCTGCTGCTGGCGAC
CGTCGTTTTGCGGGACTCATCGATGCGGAGGCCACAGGATTCAGCTCCAC
ATCTACGCAGCAGCAGCAGCAGCAACAAGCGCAACAGGAGCTTGTGCAGC
AGAACACGCAACAACAGATTCCAGCTGCTGCGGATGAGTTCAGCAAGGAG
TTCTACACCTACGCTGCACCGGAGGAGGAGTTTGCGGATCAGGAGGCTAC
CGAGCACATCGCCAGCATGCTGAAACGCAATCTCCGCGTGCTGTTCATCA
AGTCGCCGGAACACCAAGGTCTCACCAACGCAGCCCTCCAGTTGGCCAAA
CAGGCCAGCGAGCAGCGGACGGCCATCTATGTGCTCAGCAAGCAGGCGGA
TGTGAGTCAGTTGGCGCAGCGCCTGGCCAATGAGAATCAGGCCCAAAGCC
CCAAGCCGGAGGTGCACTTCGTCAAGTACCGCACCCCGGAGGATGCGGTG
CGTGCCCAGCAGCTCATTCAGCAGCAGTTCGACTCCTTGGGCGGCAGCTC
CCGCAGCTCGGACGAGGGTGTCGCCCCCGTTTTGGACTTTAGCTCAGCAC
CAGCGGCCATAAGCGTCCAGGAGCAGAATGAGGCCCAAAATCAGGTTCAG
GCAGTAACTCCTCTCACAAAGTATTTGCCAGCGGCATTGTTGCGCAACAA
GTAGAAGCTTTCTAGACCATTCGTTTGGCGCGCGAAGAGGG
BS24582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-RA | 738 | CG14250-PA | 1..738 | 17..754 | 3675 | 99.9 | Plus |
| Tb-RA | 852 | CG5480-PA | 525..605 | 502..582 | 180 | 81.5 | Plus |
| TwdlN-RA | 930 | CG5476-PA | 696..740 | 502..546 | 180 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-RA | 893 | CG14250-RA | 68..805 | 17..754 | 3675 | 99.9 | Plus |
| Tb-RA | 1031 | CG5480-RA | 614..694 | 502..582 | 180 | 81.5 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 758..802 | 502..546 | 180 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26692634..26693357 | 754..31 | 3605 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:40:52 has no hits.
BS24582.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:47:02 Download gff for
BS24582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:40:18 Download gff for
BS24582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 68..808 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:06 Download gff for
BS24582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 68..808 | 17..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:06 Download gff for
BS24582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26692631..26693356 | 32..761 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:40:18 Download gff for
BS24582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22518353..22519078 | 32..761 | 99 | <- | Minus |
BS24582.pep Sequence
Translation from 16 to 753
> BS24582.pep
MRGFLLLLLIASVSAAKLGYNYQAAAGDRRFAGLIDAEATGFSSTSTQQQ
QQQQAQQELVQQNTQQQIPAAADEFSKEFYTYAAPEEEFADQEATEHIAS
MLKRNLRVLFIKSPEHQGLTNAALQLAKQASEQRTAIYVLSKQADVSQLA
QRLANENQAQSPKPEVHFVKYRTPEDAVRAQQLIQQQFDSLGGSSRSSDE
GVAPVLDFSSAPAAISVQEQNEAQNQVQAVTPLTKYLPAALLRNK*
BS24582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-PA | 245 | CG14250-PA | 1..245 | 1..245 | 1203 | 100 | Plus |
| TwdlD-PA | 256 | CG14243-PA | 1..237 | 1..239 | 504 | 47.3 | Plus |
| Tb-PA | 283 | CG5480-PA | 1..243 | 1..230 | 472 | 42.4 | Plus |
| TwdlH-PA | 241 | CG31080-PA | 1..238 | 1..243 | 451 | 42.3 | Plus |
| TwdlK-PA | 247 | CG6460-PA | 1..243 | 1..243 | 448 | 43.3 | Plus |
